Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0427500-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:20559024:20566198:1 gene:Os08g0427500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XPC description:DNA repair protein Rad4 family protein. (Os08t0427500-01)
Sequence	ATGCGGACCAGGAGCCAGCGCGACGGCCACCACGCCGCCGCCGCTGCCGAAACCCCGCCT TCCGGGGCAAGCGGAGGATCAGGAGGGGACGTTGCGAGGGGCGGTGGCACGCCTCGCCGT CGCCGGAGGGCTTCGCCGGCCGCGGAGAAAGGGAAGTCGCCCGCCAAGGTGGAAATGGAA TCGGCATTGGAGGATAAAAGTAAAAACGTTAAGGTCCATGCAGAGGGTTATGACGATGCC GGGATGACGAGGTTCGGTAGGGATGGCTCTGAAAAGAACAGTTTGGAGGAAGAAGATCCA GATGCAGCTGATATGGACTGGGAAGAAGGGATTGTTTTCGCGGCGGAACACGATGAGTGT TATTCCCATGAGCTTGGAGAGACAGTCACCGTTGAGTTCACTGATCTACCCTCTTCCACT GAAAAGAAGACTGCTCGGAGGCTTACTGCTGAAGAAAAGGAGTTGGCTGAACTCGTGCAC AGGGTCCATTTGCTTTGCCTACTAGCAAGGGGTAGGGTAATTGACAAGGCTTGCAATGAT CCTCTGATTCAGGCTTCAATTCTCTCTGTTTTACCACAACATGTACTACGGAATTCTGTA GACACTCCAATTCTGAAAGCTAATGAACTGCGTAGTCTTGTGAGCTGGTTCCACAACACT TTCAGTGTAATTGCACAATCCGACGACAAGGGGTCTTTTAAATCAAATTTGGCATTTGCT CTTCAAAGTTATGTAGGCACTGCTGAAGAGGTTTGTGCACTTTCAGTGGCATTGTTTAGG GCTCTCAACTTAACAGCTAGGTTTGTTGCGAATCTGGATGTTGCTGGTCTCAAGCCTGAC ACTAAATCAATGGGGACATCAAATCAGGATGAACCTAGGCTTTGTACAAAGGCGCTGCCA TCTAGTTCTTTTGTTGCAGGCCATAATGAGTATAATAACCTTTCACCTGTCCTGTCACAA AACAATACTGAAGGTAGCATCAATACAACTCCAAAACAAGTCAAAGTTCAAGGCTGCAGG AAAAGTTTGTCTAAAAAATTGTCGAAGTGCAAGGCAAATCAGAGAGATAGCTCTGCATCA CTATCAAAAGATAGCTCATCCAGCAGCCAATATCCTTCCACCTCCAGTAATGCTGAAGTA CCAAGACGAAAAGGGGATTTGGAATTTGAGTTGCAGCTGGAAATGGCTCTTTTAGCATCT GCAGCTAAAAGTCAAGACAACAAGCTAGCAACTCAATTAAATCAGTCAACTGATAGCTTA CTAAGTTCAACTCCACCATTGAAGAAGTTACGAAAAAGTGAAGAAGCCTCAAGCAACTCG AGCGTGGTTTGGTCGAGGAATAGAGCACCGTTATTTTGGGCTGAGGTATTTTGTGGTGGC GAGGCATCGTCTGGAAGATGGGTCCATGTTGATGTTGCAAATGATATTATTGATGGTGAA CAAAAAGTAGAAGCTGCTTCCGCTGTTTGCAGGAAGCCTTTGAGATATGTTGTTGCCTTT GCTGGAAATGGTGCTAAAGATGTGACCAGAAGGTATTGCCTGCAATGGCACAGAATTGTT CAGGGGAGAGTGAATCCTGAGTGGTGGAAAAGTGTTTTGGCACCCCTAGAGCGTCTTGAA TTGGCAGCAACGAACAACACTGAAGAAATGGAACTTCAGACCAGGGCCTTAACAGAGCCT CTTCCTACCAATCAACAGGCCTACAAAGACCATCATCTATATGCCCTTGAGAAGTGGCTT CACAAGAACCAAGTTCTTCACCCCAAAGGCCCAGTGCTTGGCTTCTGTAAAGGGAATCCT GTTTATCCTAGATCTTGTGTTCAGACACTGCAATCAAGACATGGATGGTTGCGGGAGGGT CTGCAAGTCAGAGAAAATGAGTTGCCTGCAAAGGTCGTGACGCGGCCAAAGAGGACTTTC AATTCTCAGTCAATTCAATCTAATAGTAATAGTAATGAAGATGGGCTTAAGCCAACCATG GAACTATATGGTAAATGGCAGCTGGAACCGCTGCAACTTCCCCATGCAGTAAATGGTATT GTACCAAAGAATGAGCGTGGTCAAGTCGATGTGTGGTCAGAGAAATGTCTTCCGCCTGGT ACTGTACACCTGAGGTTACCAAGAATATTCCAGGTCGCAAAGAGACTTGGAATTGATTTT GCCCCAGCCATGGTTGGATTTGATTATCGAAACACCCGGTGCCTTCCAGTTTTTGATGGA ATTGTTGTCTGTTCCGAATTCAAAAATACTATCTTAGAGGCATATGCAGAACAAGAGGAA CGGAGACAAGCCGAGGAGAGGAAGCAGGAGGAAGCTCAGGCTCTTATTAGGTGGTATCAG CTGCTGTGTTCCGTCGTAACCACACAGCGGTTGAAGGACTCTTACAAAGCACCCTCATCA GAGCACGGACCAGAAGGACCATCCCAAGATGTTAGTCAGCAGAAGGGCACACGCAAAAGT CGAAGCTCGGAAACGAAGACTCGCTCAAGCAGACTACAGGCGGACCGACCATTTGATTCT CCTTTTCCTGTCCATGACCATGAGCATGAGTATCCAGAGGAAGATCAGAGCTTCGACGAA GAGACGTTTGTGAGGACGAAACGCTGTCCATGTGGTTTTTCAATCCAAGTTGAGGAATTG TAG

Peptide Sequence

PEP ID	Os08t0427500-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:20559024:20566198:1 gene:Os08g0427500 transcript:Os08t0427500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XPC description:DNA repair protein Rad4 family protein. (Os08t0427500-01)
Sequence	MRTRSQRDGHHAAAAAETPPSGASGGSGGDVARGGGTPRRRRRASPAAEKGKSPAKVEME SALEDKSKNVKVHAEGYDDAGMTRFGRDGSEKNSLEEEDPDAADMDWEEGIVFAAEHDEC YSHELGETVTVEFTDLPSSTEKKTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACND PLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIAQSDDKGSFKSNLAFA LQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPRLCTKALP SSSFVAGHNEYNNLSPVLSQNNTEGSINTTPKQVKVQGCRKSLSKKLSKCKANQRDSSAS LSKDSSSSSQYPSTSSNAEVPRRKGDLEFELQLEMALLASAAKSQDNKLATQLNQSTDSL LSSTPPLKKLRKSEEASSNSSVVWSRNRAPLFWAEVFCGGEASSGRWVHVDVANDIIDGE QKVEAASAVCRKPLRYVVAFAGNGAKDVTRRYCLQWHRIVQGRVNPEWWKSVLAPLERLE LAATNNTEEMELQTRALTEPLPTNQQAYKDHHLYALEKWLHKNQVLHPKGPVLGFCKGNP VYPRSCVQTLQSRHGWLREGLQVRENELPAKVVTRPKRTFNSQSIQSNSNSNEDGLKPTM ELYGKWQLEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPRIFQVAKRLGIDF APAMVGFDYRNTRCLPVFDGIVVCSEFKNTILEAYAEQEERRQAEERKQEEAQALIRWYQ LLCSVVTTQRLKDSYKAPSSEHGPEGPSQDVSQQKGTRKSRSSETKTRSSRLQADRPFDS PFPVHDHEHEYPEEDQSFDEETFVRTKRCPCGFSIQVEEL

Transcript Sequence

Transcript ID	Os08t0427500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:20559024:20566198:1 gene:Os08g0427500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XPC description:DNA repair protein Rad4 family protein. (Os08t0427500-01)
Sequence	GCGCGAAACCAGACCATCGCACCGTCCACCACCAGTCTCGTAGCATCGTGGCGCCGCACC GCGCCGTCTCCCTCTCTCTCTCTCTCTCTCTCTTCCCCTTCCTCCCCTGAAACCTAACGC GCCACCGCCACCGCCGCCGCCGCCTCCCTCTCCCAAATCTTCGCCGGGAATCGCGACGAT CAAGCCACGAGGATCGCTGCTGCTGCTGCAGCAGCTTTGCCTGTGCTTAACGCCCAGGTA TAATGCGGACCAGGAGCCAGCGCGACGGCCACCACGCCGCCGCCGCTGCCGAAACCCCGC CTTCCGGGGCAAGCGGAGGATCAGGAGGGGACGTTGCGAGGGGCGGTGGCACGCCTCGCC GTCGCCGGAGGGCTTCGCCGGCCGCGGAGAAAGGGAAGTCGCCCGCCAAGGTGGAAATGG AATCGGCATTGGAGGATAAAAGTAAAAACGTTAAGGTCCATGCAGAGGGTTATGACGATG CCGGGATGACGAGGTTCGGTAGGGATGGCTCTGAAAAGAACAGTTTGGAGGAAGAAGATC CAGATGCAGCTGATATGGACTGGGAAGAAGGGATTGTTTTCGCGGCGGAACACGATGAGT GTTATTCCCATGAGCTTGGAGAGACAGTCACCGTTGAGTTCACTGATCTACCCTCTTCCA CTGAAAAGAAGACTGCTCGGAGGCTTACTGCTGAAGAAAAGGAGTTGGCTGAACTCGTGC ACAGGGTCCATTTGCTTTGCCTACTAGCAAGGGGTAGGGTAATTGACAAGGCTTGCAATG ATCCTCTGATTCAGGCTTCAATTCTCTCTGTTTTACCACAACATGTACTACGGAATTCTG TAGACACTCCAATTCTGAAAGCTAATGAACTGCGTAGTCTTGTGAGCTGGTTCCACAACA CTTTCAGTGTAATTGCACAATCCGACGACAAGGGGTCTTTTAAATCAAATTTGGCATTTG CTCTTCAAAGTTATGTAGGCACTGCTGAAGAGGTTTGTGCACTTTCAGTGGCATTGTTTA GGGCTCTCAACTTAACAGCTAGGTTTGTTGCGAATCTGGATGTTGCTGGTCTCAAGCCTG ACACTAAATCAATGGGGACATCAAATCAGGATGAACCTAGGCTTTGTACAAAGGCGCTGC CATCTAGTTCTTTTGTTGCAGGCCATAATGAGTATAATAACCTTTCACCTGTCCTGTCAC AAAACAATACTGAAGGTAGCATCAATACAACTCCAAAACAAGTCAAAGTTCAAGGCTGCA GGAAAAGTTTGTCTAAAAAATTGTCGAAGTGCAAGGCAAATCAGAGAGATAGCTCTGCAT CACTATCAAAAGATAGCTCATCCAGCAGCCAATATCCTTCCACCTCCAGTAATGCTGAAG TACCAAGACGAAAAGGGGATTTGGAATTTGAGTTGCAGCTGGAAATGGCTCTTTTAGCAT CTGCAGCTAAAAGTCAAGACAACAAGCTAGCAACTCAATTAAATCAGTCAACTGATAGCT TACTAAGTTCAACTCCACCATTGAAGAAGTTACGAAAAAGTGAAGAAGCCTCAAGCAACT CGAGCGTGGTTTGGTCGAGGAATAGAGCACCGTTATTTTGGGCTGAGGTATTTTGTGGTG GCGAGGCATCGTCTGGAAGATGGGTCCATGTTGATGTTGCAAATGATATTATTGATGGTG AACAAAAAGTAGAAGCTGCTTCCGCTGTTTGCAGGAAGCCTTTGAGATATGTTGTTGCCT TTGCTGGAAATGGTGCTAAAGATGTGACCAGAAGGTATTGCCTGCAATGGCACAGAATTG TTCAGGGGAGAGTGAATCCTGAGTGGTGGAAAAGTGTTTTGGCACCCCTAGAGCGTCTTG AATTGGCAGCAACGAACAACACTGAAGAAATGGAACTTCAGACCAGGGCCTTAACAGAGC CTCTTCCTACCAATCAACAGGCCTACAAAGACCATCATCTATATGCCCTTGAGAAGTGGC TTCACAAGAACCAAGTTCTTCACCCCAAAGGCCCAGTGCTTGGCTTCTGTAAAGGGAATC CTGTTTATCCTAGATCTTGTGTTCAGACACTGCAATCAAGACATGGATGGTTGCGGGAGG GTCTGCAAGTCAGAGAAAATGAGTTGCCTGCAAAGGTCGTGACGCGGCCAAAGAGGACTT TCAATTCTCAGTCAATTCAATCTAATAGTAATAGTAATGAAGATGGGCTTAAGCCAACCA TGGAACTATATGGTAAATGGCAGCTGGAACCGCTGCAACTTCCCCATGCAGTAAATGGTA TTGTACCAAAGAATGAGCGTGGTCAAGTCGATGTGTGGTCAGAGAAATGTCTTCCGCCTG GTACTGTACACCTGAGGTTACCAAGAATATTCCAGGTCGCAAAGAGACTTGGAATTGATT TTGCCCCAGCCATGGTTGGATTTGATTATCGAAACACCCGGTGCCTTCCAGTTTTTGATG GAATTGTTGTCTGTTCCGAATTCAAAAATACTATCTTAGAGGCATATGCAGAACAAGAGG AACGGAGACAAGCCGAGGAGAGGAAGCAGGAGGAAGCTCAGGCTCTTATTAGGTGGTATC AGCTGCTGTGTTCCGTCGTAACCACACAGCGGTTGAAGGACTCTTACAAAGCACCCTCAT CAGAGCACGGACCAGAAGGACCATCCCAAGATGTTAGTCAGCAGAAGGGCACACGCAAAA GTCGAAGCTCGGAAACGAAGACTCGCTCAAGCAGACTACAGGCGGACCGACCATTTGATT CTCCTTTTCCTGTCCATGACCATGAGCATGAGTATCCAGAGGAAGATCAGAGCTTCGACG AAGAGACGTTTGTGAGGACGAAACGCTGTCCATGTGGTTTTTCAATCCAAGTTGAGGAAT TGTAGCAAAATGATATCAGAAATGCACTAACTTAAGGTGTAGCCTGTTTTTGGTCCCAGG TGAACTCTCAAAACTATGGTAGCTGTGATGCTTCTGACGAATGCAGGTTTTGATGCATTT GTCTTGAGTTGGGAGTTAAGAGTGAGTTTGCTAAACCCATAGTTCAGCTGTTGCACTGAA ATGAGGTGTTGAAAGTTGAAGCTGATGGTATGAAATGTAGTGGGTGTTAAAACTGTTAAC AGTATATGCTTGTTTAAGTTTCAGCATAGTGCCATCACGCTAAGATTTTATCAAACT