Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0425000-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:20402026:20405973:1 gene:Os08g0425000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-05-M08. (Os08t0425000-01)
Sequence

ATGGCGCCGCCCCCGCCGCGGCGCCCCGTCGTGCAGAGGAGCCTGATCTCCCTCCTCCTT
CTCCCGGTGGTCCTCCTCGCGCTCCCGACGGCGGCGGCGGCGGGGGCGGGGTGGGCGCCG
TTCAGGGCGAGGGACCTGCTCCCGCTGCTGCCGCGCGGGCTGACGTGGCCGGCCGTGGGC
TCCGTCCACAGCGCCGTCGACCTCCTCCCACGGTTCGTCGCCCACGTCGCGCCGGAGGCC
TCCTCCGCGGTCGCCTGGCGCGCCACGTGCTTCGCGGACAACGAGGCCGTCCTCACCCTC
ACCCATTCCTCCTCCGCCGCCGCCGCCGGCCGCAACGCCACCACCGCCGGCGCTGCTGCC
CTTGGCGGCGCCCTCCTCCGCCTCAAGACTGCTTCAGCTCAGAGCTGGACATGCATGGAT
CTGTATGTGTTTGCAACGCCGTACAGGATAGGATGGGATTACTACATTACAGCACAGGAG
CACACCTTTGAGATCAAGGCATGGGAGGAACCAGGAGAAATGGAATATGTGAAGCAGCAT
GGCATTGCCATATTTCTCATGCCATCTGGAATGCTGGGGACGTTGTTGTCTCTGATTGAT
GTCATACCTCTGTTCTCAAACACTATTTGGGGGCAGGATGCCAACTTGGCCTTTCTTCAG
AAGCACATGGGAGCTTCGTTTGAGAAGCGTACCCAACCTTGGTCTGCTAACATCAGAAAA
GAGGACGTACATTCTGGTGACTTTTTGGCTCTTTCGAAGATTCGAGGGCGATGGGGTGGA
TTTCAGACATTGGAGAAATGGGTGACTGGTGCATTTGCTGGTCACACTGCTGTTTGCTTG
AAAGATGAGAACGGCACTCTCTGGGTTGCAGAATCAGGCTATGAAAACAAAAAGGGTGAA
GAGGTCATTGCTATAGTTCCATGGGATGAATGGTGGGGAATGGCACTTAAAGATGACTCA
AATCCTCAGGTAGCATTTCTGCCATTGCACCCTGATGTTCGGGCCAGGTTCAATGAAACT
GCTGCATGGGAATTTGCACGAAGCATGTATGGCAAACCCTATGGATATCATAACATGATA
TTTAGTTGGATTGATACGATGTCAGACAATTATCCACCACCACTGGATGCTAACCTGGTA
ATGGCTGTTATGTCAATGTGGACCAGATTACAACCACTTTATGCTTCTAACATGTGGAAT
GAGGCCCTTAATAAACGACTTGGGACTGAGAAATTGGACCTTCATGGGATCATCACCGAG
ACCGGAAAACGGGGCATGTCTTTCAACCAGTTGCTCACTATACCCGAGCAGGACGACTGG
GAATACAGCGATGGCAAATCAACCACTTGCGTCGCCTTCATTCTCTCAATGTACAAGAAG
GCCGGGGTCTTTGCTCCTTTCACGGAATCGATCCAGGTCACAGAATTCACGATTCGAGAC
GCGTATATGCTCAAGATCTTCGAGGACAACCAGACGAGGCTGCCAAGCTGGTGCAACAGC
GGGGCGGACAGGCTCCCGTTCTGCCAGATCCTGGGCGAGTACAAGATGGAGCTGCCGGAG
TACAACACGATCGAGCCGTACGCCAACATGAACGAGAACTGCCCCTCCTCGCCGCCCACC
TACACCAGGCCGCTGGGATGCTAG

Peptide Sequence

PEP ID

Os08t0425000-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:20402026:20405973:1 gene:Os08g0425000 transcript:Os08t0425000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-05-M08. (Os08t0425000-01)
Sequence

MAPPPPRRPVVQRSLISLLLLPVVLLALPTAAAAGAGWAPFRARDLLPLLPRGLTWPAVG
SVHSAVDLLPRFVAHVAPEASSAVAWRATCFADNEAVLTLTHSSSAAAAGRNATTAGAAA
LGGALLRLKTASAQSWTCMDLYVFATPYRIGWDYYITAQEHTFEIKAWEEPGEMEYVKQH
GIAIFLMPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFLQKHMGASFEKRTQPWSANIRK
EDVHSGDFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVCLKDENGTLWVAESGYENKKGE
EVIAIVPWDEWWGMALKDDSNPQVAFLPLHPDVRARFNETAAWEFARSMYGKPYGYHNMI
FSWIDTMSDNYPPPLDANLVMAVMSMWTRLQPLYASNMWNEALNKRLGTEKLDLHGIITE
TGKRGMSFNQLLTIPEQDDWEYSDGKSTTCVAFILSMYKKAGVFAPFTESIQVTEFTIRD
AYMLKIFEDNQTRLPSWCNSGADRLPFCQILGEYKMELPEYNTIEPYANMNENCPSSPPT
YTRPLGC

Transcript Sequence

Transcript ID

Os08t0425000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:20402026:20405973:1 gene:Os08g0425000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-05-M08. (Os08t0425000-01)
Sequence

AAACACAACAAAACCCACACTGTCAAGCGTCAACCAGCCACCCGCCTCGCGGAGTCACGG
GCTCGAGCTCCACCACCAAAGCTCGAGCTCTCGCGCCCGCGTGCCGTGCGCCAATGGCGC
CGCCCCCGCCGCGGCGCCCCGTCGTGCAGAGGAGCCTGATCTCCCTCCTCCTTCTCCCGG
TGGTCCTCCTCGCGCTCCCGACGGCGGCGGCGGCGGGGGCGGGGTGGGCGCCGTTCAGGG
CGAGGGACCTGCTCCCGCTGCTGCCGCGCGGGCTGACGTGGCCGGCCGTGGGCTCCGTCC
ACAGCGCCGTCGACCTCCTCCCACGGTTCGTCGCCCACGTCGCGCCGGAGGCCTCCTCCG
CGGTCGCCTGGCGCGCCACGTGCTTCGCGGACAACGAGGCCGTCCTCACCCTCACCCATT
CCTCCTCCGCCGCCGCCGCCGGCCGCAACGCCACCACCGCCGGCGCTGCTGCCCTTGGCG
GCGCCCTCCTCCGCCTCAAGACTGCTTCAGCTCAGAGCTGGACATGCATGGATCTGTATG
TGTTTGCAACGCCGTACAGGATAGGATGGGATTACTACATTACAGCACAGGAGCACACCT
TTGAGATCAAGGCATGGGAGGAACCAGGAGAAATGGAATATGTGAAGCAGCATGGCATTG
CCATATTTCTCATGCCATCTGGAATGCTGGGGACGTTGTTGTCTCTGATTGATGTCATAC
CTCTGTTCTCAAACACTATTTGGGGGCAGGATGCCAACTTGGCCTTTCTTCAGAAGCACA
TGGGAGCTTCGTTTGAGAAGCGTACCCAACCTTGGTCTGCTAACATCAGAAAAGAGGACG
TACATTCTGGTGACTTTTTGGCTCTTTCGAAGATTCGAGGGCGATGGGGTGGATTTCAGA
CATTGGAGAAATGGGTGACTGGTGCATTTGCTGGTCACACTGCTGTTTGCTTGAAAGATG
AGAACGGCACTCTCTGGGTTGCAGAATCAGGCTATGAAAACAAAAAGGGTGAAGAGGTCA
TTGCTATAGTTCCATGGGATGAATGGTGGGGAATGGCACTTAAAGATGACTCAAATCCTC
AGGTAGCATTTCTGCCATTGCACCCTGATGTTCGGGCCAGGTTCAATGAAACTGCTGCAT
GGGAATTTGCACGAAGCATGTATGGCAAACCCTATGGATATCATAACATGATATTTAGTT
GGATTGATACGATGTCAGACAATTATCCACCACCACTGGATGCTAACCTGGTAATGGCTG
TTATGTCAATGTGGACCAGATTACAACCACTTTATGCTTCTAACATGTGGAATGAGGCCC
TTAATAAACGACTTGGGACTGAGAAATTGGACCTTCATGGGATCATCACCGAGACCGGAA
AACGGGGCATGTCTTTCAACCAGTTGCTCACTATACCCGAGCAGGACGACTGGGAATACA
GCGATGGCAAATCAACCACTTGCGTCGCCTTCATTCTCTCAATGTACAAGAAGGCCGGGG
TCTTTGCTCCTTTCACGGAATCGATCCAGGTCACAGAATTCACGATTCGAGACGCGTATA
TGCTCAAGATCTTCGAGGACAACCAGACGAGGCTGCCAAGCTGGTGCAACAGCGGGGCGG
ACAGGCTCCCGTTCTGCCAGATCCTGGGCGAGTACAAGATGGAGCTGCCGGAGTACAACA
CGATCGAGCCGTACGCCAACATGAACGAGAACTGCCCCTCCTCGCCGCCCACCTACACCA
GGCCGCTGGGATGCTAGCTGAGCTGACCACCAACATATGCCAGTTGTTCAGACTCTAGAA
GATATATACAGATCGTGTTTCAGATGGAATTGTTCTGATCGATCTAGCTAGGCCGGAGTG
TCCGTGTAAATAAACCGATTTTTATCGTGCTCAGATGGTAGTGCTGATGTGAATGTTGAT
TTTCCTGTGGTAAACTACAGGGGTGTGCTACGGAATTCGATGAAATATGAACAGGATGTC
GATTACTTGCAAAAGTTGCAATCCTAGCTTGAGTGACC