Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0421900-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:20204744:20207777:1 gene:Os08g0421900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0421900-01)
Sequence

ATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCGACTCCTACACCATCTCCGGCACCAAC
AAGGTCGTACGAGTGGGGGACTGCGTGCTGATGCGGCCGGTGGACTCGGACAACCAGCCG
TACGTGGCGCGGGTGGAGAAGATGGAGCTGGACGGGCGCGGGAGCGTGCGGGTGCGGGTG
CGGTGGTACTACCGGCCCGAGGAGTCCAAGGGCGGGAGGAGGCAGTTCCATGGCGCCAAG
GAGCTCTTCCTCTCCGACCACTTCGACATGCAGAGCGCCAACACCATCGAGGGCAAGTGC
GTCGTCCACTCCTTCAAGAACTACACCAAGCTCGACAACGTCGGCCCCGAGGACTTCTTC
TGCCGCTTCGAGTACAAGGCCGCCACCGGCGCCTTCACCCCCGACCGCGTCGCCGTATAC
TGCAAGTGTGAGATGCCATACAACCCGGATGATCTCATGGTGCAGTGCGATGACTGCAAG
GACTGGTTTCATCCTTCATGCATGAGCATGACGATTGAGCAGGCCAAAAAACTAGATCAC
TTTGTGTGCTCAGATTGTGTCAAGGAAAACGGTGCAAAGAGACCTTCACATGCATATGCA
GGTTCAACAAAGTATGAGCCTAAGGCTGAGTCAAAAAGGCAGAGGAGGTGA

Peptide Sequence

PEP ID

Os08t0421900-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:20204744:20207777:1 gene:Os08g0421900 transcript:Os08t0421900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0421900-01)
Sequence

MAKTKQGKRDVDSYTISGTNKVVRVGDCVLMRPVDSDNQPYVARVEKMELDGRGSVRVRV
RWYYRPEESKGGRRQFHGAKELFLSDHFDMQSANTIEGKCVVHSFKNYTKLDNVGPEDFF
CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCDDCKDWFHPSCMSMTIEQAKKLDH
FVCSDCVKENGAKRPSHAYAGSTKYEPKAESKRQRR

Transcript Sequence

Transcript ID

Os08t0421900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:20204744:20207777:1 gene:Os08g0421900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0421900-01)
Sequence

ACCTCCCAAAACCTCGCCCCCTCGCCATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCG
ACTCCTACACCATCTCCGGCACCAACAAGGTCGTACGAGTGGGGGACTGCGTGCTGATGC
GGCCGGTGGACTCGGACAACCAGCCGTACGTGGCGCGGGTGGAGAAGATGGAGCTGGACG
GGCGCGGGAGCGTGCGGGTGCGGGTGCGGTGGTACTACCGGCCCGAGGAGTCCAAGGGCG
GGAGGAGGCAGTTCCATGGCGCCAAGGAGCTCTTCCTCTCCGACCACTTCGACATGCAGA
GCGCCAACACCATCGAGGGCAAGTGCGTCGTCCACTCCTTCAAGAACTACACCAAGCTCG
ACAACGTCGGCCCCGAGGACTTCTTCTGCCGCTTCGAGTACAAGGCCGCCACCGGCGCCT
TCACCCCCGACCGCGTCGCCGTATACTGCAAGTGTGAGATGCCATACAACCCGGATGATC
TCATGGTGCAGTGCGATGACTGCAAGGACTGGTTTCATCCTTCATGCATGAGCATGACGA
TTGAGCAGGCCAAAAAACTAGATCACTTTGTGTGCTCAGATTGTGTCAAGGAAAACGGTG
CAAAGAGACCTTCACATGCATATGCAGGTTCAACAAAGTATGAGCCTAAGGCTGAGTCAA
AAAGGCAGAGGAGGTGAAAACTCTTGACTGGGTAACATCTGCTGCTGAGGGATACCTTGT
GCTTTTCCGTGGCGAAGGTTGAGGTGTACAGTGCAAGAGAACCAAGGCGTCTGCAGAATT
CGGCCTTCGCCGCCTCTTAGCCTGTTCAAG