Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0414200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:19796449:19801162:1 gene:Os08g0414200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0414200-01)
Sequence	ATGCCGGCGGTGGAGGGGATGCGGGACGTGGTCGCCACCGTGAGCGGCTACCACGGCGAC GAGCGGCACAGGCTGGTCAGGCTCATCGCGGAGACCGGCGCGAGCTACGTCGGCGCCATG AGCAGATCCATCACCCACCTGGTGTGCTGGAGGCTTGAGGGGAAGAAGTATGACATCGCG AGGAGGCTTCGGACGCGCGTCGTCAGCCACCGGTGGTTCGAGGACTGCCTCAAGGAGGGG AGGCGCCTCCCCGAGAAACCCTACATGCTGGAAAGTGGTGAAGAAGCAGGGCCAGTCCCT GAGCTGCCCACTTTCCCGCGTTCACGATCCAAGAGAAATGCAAGCATGGAGGATAGATGC TTGAAAGAATTACCTGATGATTTCTGCAATACTTCATATGCGACCGATGTGCTTGTGGTT GCTGATTCAGGTTCTGATTGCAATCATCAGCGATGGTCTGATTCCTCCCTACTGAAAGAA AATTTTGTTGGTGATCGCGATAATTCTAAGATTGGTGCAACACACGTGAAGGAAAGAAGA AAACGTTTAAAGCATGCACAAAATTCAACCAATGAAGATGCACTAGATGCAGAAGACAAT ATTTCTAGGCTCATGGCAAGACAAGGGCGTTATGAGTCAAGTTATACTTCATCTCGGAGC GCATCAAATCAGAAGGGAGATTTGTTAAAGCTTCTGCATAATGATGATGCTAGCATGATG AGAAAAAGAAATAGTCTCATGAAAAAGGAAACAAGAACCAAGCTTGCAGGCTATCTTATA GAAAGCTGTGAAAATGGAAGTTTGACAGACAGCTTCGATGAACCTCAAATGTCGGATACT CCGCCCACTGAAGATCGAAGAAAAATAAGGAAGACAAGACTGCGACAAAGTACGTTGGAC AGTATATATGATTATGGTGAAGCCAGTGAGCATGATCCTGAAAAAAGTGAGGATCAAGAA AATTTTGAATTGGGTGAAAGTTCAAGAAGCTTTCAGTCAAGTGATTCATCCAGACAAGAA CCAGCTTTCTGTACTGAGAAAACAAATCAAGGAAGCATTGACATTGCAGCTGATGATGAC AAGGGAGATGATGAGAAAGCCACTTTGGAAGAACCAACCAGTTGTCAAGGGCAAGCTGAA CTTTCCTGTGTCATTTGCTGGACTGATTTTTCATCCACAAGGGGCATCTTACCATGTGGA CACCGATTTTGTTATTCATGCATTCAAGAATGGGCGGATTCTCTGTCTTCTAGGGGAAAA GTTTCGACATGTCCTCTGTGCAAAACAAGTTTTGCCTGGATCAGTAAAATAGATGAGGCT GGTACATCTGATCAAAAGATATACTCTCAAACTATACCTTGCTCAACTTCTACCGACACT TTCATATTTGATGATAGAGTCTACGGCCTCCCAGAATCACCGTCTGGGCAAGGGGCATGT TACCAGTGCCACTGTCGTGAGCCTGAGGAGCTTCTTCTGAGCTGCCATGTTTGCCGGTCT CAATGGGTACACTCGTATTGTCTTGATCCTCCATTGACGCCATGGACGTGCATACACTGC AGAGATCTTCGGATGCTCTATCAGCGTTATCGCTAG

Peptide Sequence

PEP ID	Os08t0414200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:19796449:19801162:1 gene:Os08g0414200 transcript:Os08t0414200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0414200-01)
Sequence	MPAVEGMRDVVATVSGYHGDERHRLVRLIAETGASYVGAMSRSITHLVCWRLEGKKYDIA RRLRTRVVSHRWFEDCLKEGRRLPEKPYMLESGEEAGPVPELPTFPRSRSKRNASMEDRC LKELPDDFCNTSYATDVLVVADSGSDCNHQRWSDSSLLKENFVGDRDNSKIGATHVKERR KRLKHAQNSTNEDALDAEDNISRLMARQGRYESSYTSSRSASNQKGDLLKLLHNDDASMM RKRNSLMKKETRTKLAGYLIESCENGSLTDSFDEPQMSDTPPTEDRRKIRKTRLRQSTLD SIYDYGEASEHDPEKSEDQENFELGESSRSFQSSDSSRQEPAFCTEKTNQGSIDIAADDD KGDDEKATLEEPTSCQGQAELSCVICWTDFSSTRGILPCGHRFCYSCIQEWADSLSSRGK VSTCPLCKTSFAWISKIDEAGTSDQKIYSQTIPCSTSTDTFIFDDRVYGLPESPSGQGAC YQCHCREPEELLLSCHVCRSQWVHSYCLDPPLTPWTCIHCRDLRMLYQRYR

Transcript Sequence

Transcript ID	Os08t0414200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:19796449:19801162:1 gene:Os08g0414200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0414200-01)
Sequence	GGAAGGAGGAGGGGAATCGCAAAAGGCGCCTCCAGAAATTTCTCTCCTCTCCTCTTCCCC CACCGCGTCGCCCCATCTCGCCGCCGCCGCCGCCGCCGCCGCCGCTCGCCGCCGGTTCGG AGACCGCGTCACTGATTGGCCTGCCTCTCCTCGCACCGGGGGTTTTTCCAGCGCCCAAAT CTCTCGGCGGGGACCTCCATGCCGGCGGTGGAGGGGATGCGGGACGTGGTCGCCACCGTG AGCGGCTACCACGGCGACGAGCGGCACAGGCTGGTCAGGCTCATCGCGGAGACCGGCGCG AGCTACGTCGGCGCCATGAGCAGATCCATCACCCACCTGGTGTGCTGGAGGCTTGAGGGG AAGAAGTATGACATCGCGAGGAGGCTTCGGACGCGCGTCGTCAGCCACCGGTGGTTCGAG GACTGCCTCAAGGAGGGGAGGCGCCTCCCCGAGAAACCCTACATGCTGGAAAGTGGTGAA GAAGCAGGGCCAGTCCCTGAGCTGCCCACTTTCCCGCGTTCACGATCCAAGAGAAATGCA AGCATGGAGGATAGATGCTTGAAAGAATTACCTGATGATTTCTGCAATACTTCATATGCG ACCGATGTGCTTGTGGTTGCTGATTCAGGTTCTGATTGCAATCATCAGCGATGGTCTGAT TCCTCCCTACTGAAAGAAAATTTTGTTGGTGATCGCGATAATTCTAAGATTGGTGCAACA CACGTGAAGGAAAGAAGAAAACGTTTAAAGCATGCACAAAATTCAACCAATGAAGATGCA CTAGATGCAGAAGACAATATTTCTAGGCTCATGGCAAGACAAGGGCGTTATGAGTCAAGT TATACTTCATCTCGGAGCGCATCAAATCAGAAGGGAGATTTGTTAAAGCTTCTGCATAAT GATGATGCTAGCATGATGAGAAAAAGAAATAGTCTCATGAAAAAGGAAACAAGAACCAAG CTTGCAGGCTATCTTATAGAAAGCTGTGAAAATGGAAGTTTGACAGACAGCTTCGATGAA CCTCAAATGTCGGATACTCCGCCCACTGAAGATCGAAGAAAAATAAGGAAGACAAGACTG CGACAAAGTACGTTGGACAGTATATATGATTATGGTGAAGCCAGTGAGCATGATCCTGAA AAAAGTGAGGATCAAGAAAATTTTGAATTGGGTGAAAGTTCAAGAAGCTTTCAGTCAAGT GATTCATCCAGACAAGAACCAGCTTTCTGTACTGAGAAAACAAATCAAGGAAGCATTGAC ATTGCAGCTGATGATGACAAGGGAGATGATGAGAAAGCCACTTTGGAAGAACCAACCAGT TGTCAAGGGCAAGCTGAACTTTCCTGTGTCATTTGCTGGACTGATTTTTCATCCACAAGG GGCATCTTACCATGTGGACACCGATTTTGTTATTCATGCATTCAAGAATGGGCGGATTCT CTGTCTTCTAGGGGAAAAGTTTCGACATGTCCTCTGTGCAAAACAAGTTTTGCCTGGATC AGTAAAATAGATGAGGCTGGTACATCTGATCAAAAGATATACTCTCAAACTATACCTTGC TCAACTTCTACCGACACTTTCATATTTGATGATAGAGTCTACGGCCTCCCAGAATCACCG TCTGGGCAAGGGGCATGTTACCAGTGCCACTGTCGTGAGCCTGAGGAGCTTCTTCTGAGC TGCCATGTTTGCCGGTCTCAATGGGTACACTCGTATTGTCTTGATCCTCCATTGACGCCA TGGACGTGCATACACTGCAGAGATCTTCGGATGCTCTATCAGCGTTATCGCTAGTCTGAA CTCTGAAACCTGGATATTCGTTGATTAGAGGTTATATATGGCTTTCGCATTTGAAATGCA TCTTCTCTGAGCTGATCATTTGCTTCAGGCCTTGTTATATAGGTTGAGAATTGACAATTA CTGGCTTCATAATTGCAGTATGCAAATTGTTGTACTAATTGTGAAGTTGTACTGTTTTTG GGTAAATCTTACGTGCCCAGTCTACCAAATTGGAGTACTCCCTCCAGTTCCATTTTAATT GACGTTTTGGACAATGACACGGTCTATAAGATACATCTTTGATCT