Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0412200-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:19721383:19725995:-1 gene:Os08g0412200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0412200-01)
Sequence

ATGGGGCTGAGGGAGAAGAAGCGGAACCAGAGGCGCGTGCTCGCCCGGCGCTCGGCCGCT
CCCCGCTCCGGGGAGGGCAAGGACTTCCTGCCGCTGGAAGAAAGGCCTGGGAAGAAGAGG
GCCCGGGAGGAGCAGCCCGAGGAGCCGGAGAACACGTCCACCGTCCTCTACATCGGGCAC
ATCCCCCATGGGTTCTATGAGGAACAGATGCAAGGTTTCTTTCAGCAATTTGGAACTGTT
AAAAGGTTGAGGATTGCCCGAAACCGCAAGACAGGAAAGTCCAAGCATTATGGGTTCATT
GAGTTTGAGAACCCTGAGGTAGCAAAGATTGTGGCAGATGAGATGAACAACTACCTGCTG
TTTGAGCACACTTTGCAAATTGCGATTGTTCCACCTGAGAAAATTCATCCAAAATTGTGG
AAAGGTGTGCGACGGGGGTTTATACCAATTGATCGGGTAGCAATTGAACGGAGGAGGCTG
AACAAGGATAAAACAATAGAAGAGCACAAAAAGTTGGTTGACAAAATCGTAAAACGGGAT
GAGAAGCGTCGCAAAAGAATCAAAGCTGCTGGGATTGATTACGAGTGTCCACCCCTTATC
GGCAGCGTTCAGCCTTCAGCTAAGAAGATCAAGTTTGAGGATTAG

Peptide Sequence

PEP ID

Os08t0412200-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:19721383:19725995:-1 gene:Os08g0412200 transcript:Os08t0412200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0412200-01)
Sequence

MGLREKKRNQRRVLARRSAAPRSGEGKDFLPLEERPGKKRAREEQPEEPENTSTVLYIGH
IPHGFYEEQMQGFFQQFGTVKRLRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLL
FEHTLQIAIVPPEKIHPKLWKGVRRGFIPIDRVAIERRRLNKDKTIEEHKKLVDKIVKRD
EKRRKRIKAAGIDYECPPLIGSVQPSAKKIKFED

Transcript Sequence

Transcript ID

Os08t0412200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:19721383:19725995:-1 gene:Os08g0412200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0412200-01)
Sequence

CCTCTCTCGCCGTCGTCGCGCCTCGACGGCTTTTGCTCCCCTCTCCCCCACCGCCTCCTC
CGGCCGCCGCCGCCGCCGCTGCCGCCGCCCGACGACGTAGTCAGGGGGGCTCGTCAGGAG
TAAGGAGGGAGATGGGGCTGAGGGAGAAGAAGCGGAACCAGAGGCGCGTGCTCGCCCGGC
GCTCGGCCGCTCCCCGCTCCGGGGAGGGCAAGGACTTCCTGCCGCTGGAAGAAAGGCCTG
GGAAGAAGAGGGCCCGGGAGGAGCAGCCCGAGGAGCCGGAGAACACGTCCACCGTCCTCT
ACATCGGGCACATCCCCCATGGGTTCTATGAGGAACAGATGCAAGGTTTCTTTCAGCAAT
TTGGAACTGTTAAAAGGTTGAGGATTGCCCGAAACCGCAAGACAGGAAAGTCCAAGCATT
ATGGGTTCATTGAGTTTGAGAACCCTGAGGTAGCAAAGATTGTGGCAGATGAGATGAACA
ACTACCTGCTGTTTGAGCACACTTTGCAAATTGCGATTGTTCCACCTGAGAAAATTCATC
CAAAATTGTGGAAAGGTGTGCGACGGGGGTTTATACCAATTGATCGGGTAGCAATTGAAC
GGAGGAGGCTGAACAAGGATAAAACAATAGAAGAGCACAAAAAGTTGGTTGACAAAATCG
TAAAACGGGATGAGAAGCGTCGCAAAAGAATCAAAGCTGCTGGGATTGATTACGAGTGTC
CACCCCTTATCGGCAGCGTTCAGCCTTCAGCTAAGAAGATCAAGTTTGAGGATTAGTGCC
TTTTGACCAGTAGTGACAGGACAGTCGAGTAAAATGACTGGTTTGTTTTTAGTGACGAAG
ACGTGTCAACATCATTTTGTTGCGTGTTTAATCGGTGTTGTATCAGTGTGACCAAAATTG
CACAACGAAGCAGGAAATTTCTGAGATTACGACTGGTATATCTTTGAGAAAATAGAAATC
ATACTGTGTTTTCCCGCCGCTC