Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0409100-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:19578772:19582453:1 gene:Os08g0409100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6 description:Trehalose-6-phosphate phosphatase. (Os08t0409100-01)
Sequence

ATGACGAAGCAGAGCGTGGTGGTGCCGGAGGTGGCGGTGCCGATGCCGCCCAACTCCGCG
CCGCTGCTCCCGTACCCGCCGCCGCGGGCCGCGCCGGGCGTCGCCGTGCGCAAGAAGTAC
CTCCAGGCGCAGCTCGACCTCGGCGCGGGCCTCCCGCTCATCAACGGATGGGTGGAGTCC
ATGCGGGCCTCCTCCCCCACCCACGCCAAGGCCGCCGCCGCGCTCGCCGCCGCCGGCGCC
GTCGACGACGAGCGCGCCGCCTGGATGGTGAGGCACCCGTCGGCGCTGAGCAAGTTCGAG
CAGATCGTGGCGGCGTCCAAGGGGAAGAAGATCGTCATGTTCCTCGACTACGACGGCACG
CTGTCCCCCATCGTCGACGACCCGGACTCCGCCTTCATGTCCGACACGATGCGGCGGGCG
GTGCGCAGCGTCGCCAAGCACTTCCCGACGGCGATCGTCAGCGGCCGGTGCCGCGACAAG
GTGTTCGAGTTCGTGAAGCTGGCGGAACTCTACTACGCCGGTAGCCATGGCATGGACATC
AAGGGCCCCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGCGAAAGGCGTTCTCTTTCAG
CCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGATTCTCTGATAGAAAGGACC
AAGTGCATACCTGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGA
TGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGAC
TACCCCAAACTGAAGCTCACGCAGGGGAGGATGGTGTTCGAGATCCGGCCCACCATCAAG
TGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACC
AACGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTC
CGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCC
TCCTACTCCCTGCAGGAGCCAGCCGAGGTGATGGAGTTCTTGCTGCGGCTGGTGGAGTGG
GAGCGCCTCTCCCGTGCTCGCCCCAAGTGGTGA

Peptide Sequence

PEP ID

Os08t0409100-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:19578772:19582453:1 gene:Os08g0409100 transcript:Os08t0409100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6 description:Trehalose-6-phosphate phosphatase. (Os08t0409100-01)
Sequence

MTKQSVVVPEVAVPMPPNSAPLLPYPPPRAAPGVAVRKKYLQAQLDLGAGLPLINGWVES
MRASSPTHAKAAAALAAAGAVDDERAAWMVRHPSALSKFEQIVAASKGKKIVMFLDYDGT
LSPIVDDPDSAFMSDTMRRAVRSVAKHFPTAIVSGRCRDKVFEFVKLAELYYAGSHGMDI
KGPAKASRHNKAKAKGVLFQPASEFLPMIEQVHDSLIERTKCIPGAKVENNKFCVSVHFR
CVDEKSWSTLADIVKAELKDYPKLKLTQGRMVFEIRPTIKWDKGKALEFLLESLGFADCT
NVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVMEFLLRLVEW
ERLSRARPKW

Transcript Sequence

Transcript ID

Os08t0409100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:19578772:19582453:1 gene:Os08g0409100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6 description:Trehalose-6-phosphate phosphatase. (Os08t0409100-01)
Sequence

ACACACCTCCCTCCTCTCTCCGCCGCGAATCCGACGAGCTCGAACGCGAAGGCGGGGACT
CTCTCTCTCTCTCTCTTCGACCCGGATCGATTGTATCGATCTCGCCCCGTCGGTCGATCG
ATCGATACCTCGACACGGAGCGACCGATGACGAAGCAGAGCGTGGTGGTGCCGGAGGTGG
CGGTGCCGATGCCGCCCAACTCCGCGCCGCTGCTCCCGTACCCGCCGCCGCGGGCCGCGC
CGGGCGTCGCCGTGCGCAAGAAGTACCTCCAGGCGCAGCTCGACCTCGGCGCGGGCCTCC
CGCTCATCAACGGATGGGTGGAGTCCATGCGGGCCTCCTCCCCCACCCACGCCAAGGCCG
CCGCCGCGCTCGCCGCCGCCGGCGCCGTCGACGACGAGCGCGCCGCCTGGATGGTGAGGC
ACCCGTCGGCGCTGAGCAAGTTCGAGCAGATCGTGGCGGCGTCCAAGGGGAAGAAGATCG
TCATGTTCCTCGACTACGACGGCACGCTGTCCCCCATCGTCGACGACCCGGACTCCGCCT
TCATGTCCGACACGATGCGGCGGGCGGTGCGCAGCGTCGCCAAGCACTTCCCGACGGCGA
TCGTCAGCGGCCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTGGCGGAACTCTACT
ACGCCGGTAGCCATGGCATGGACATCAAGGGCCCCGCGAAGGCCTCCCGCCACAACAAGG
CCAAGGCGAAAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGG
TGCACGATTCTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAGGTGGAGAACAACA
AGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTG
ACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGGAGGATGG
TGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCG
AGTCGCTAGGGTTCGCCGACTGCACCAACGTGCTGCCGGTGTACATCGGCGACGACCGGA
CCGACGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGT
CCAAGTACCCCAAGGACACCAACGCCTCCTACTCCCTGCAGGAGCCAGCCGAGGTGATGG
AGTTCTTGCTGCGGCTGGTGGAGTGGGAGCGCCTCTCCCGTGCTCGCCCCAAGTGGTGAT
TTCGCCGACGGCTTCAACCCACATTTCCCGACAGCTATCTCTCTCTCTCTCTCTGCTACT
GCTCTGCTCTGCTCCTAGGGGTTTTGGGTTAGGATCGGAGAAAGATTATTATTATTATTA
TTATCATCATCAAGGGTATTAGTAGTATATAAATATATGTAATTAAGGGGAGGGGTGATT
AATTAGAGAGGGAGCATTATCTTTTAGTTATTATCGTAGCTCTCCTGTACACTGTTCTGT
GTGCACACACTGACAGTGCGCGCGCGCGCGTCCTCTGGTTTTTTTGGGAGGCGCTTTGTG
TTGGGTGGTGGTGGCTATGAGAAGGGGATGAAGAGTGTTGCTGTGTTTGGGCCTTGTGCT
CTCTCGTCCTTTTTGGCTATGGTGGTTGCTATGCTACCTGGGTGGGTGCACAGGAAGGTG
GATGGATTTGAGTGCTACCGTGTAATTGTATATGGCTTCTGATTATCTATGTACAAGAAT
ATATATGATGAAATGAAGAGCATCAGAATATTACAGC