Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0407200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:19463943:19469078:1 gene:Os08g0407200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLANT ARCHITECTURE AND YIELD 1 description:Auxin polar transport and distribution, Plant architecture and grain yield (Os08t0407200-01);Similar to predicted protein. (Os08t0407200-02)
Sequence	ATGTGGCCCTCAGATATTTGGAAGGCGCATGCAGGGTCATCACAGTCAGAGGGATCAGCA CTGGATATGGAGAGAAACGGATGCAACCATAACTGTTGCCCATCTCCTCTCCAACCAATT GCATCAGGTGGTCAGCACTCTGAAAGCAGCGCTGCATATTTTTCTTGGCCAACATCTACT CTAATGCACGGGTCTGCCGAAGGCCGCGCTAATTACTTTGGGAACCTACAGAAGGGTGTG TTACCTGGACATCTTGGCCGCTTGCCAACAGGGCAAAGGGCCACCACCTTGCTTGATTTG ATGATTATAAGAGCATTCCACAGCAAGATCCTACGTCGCTTTAGTCTTGGTACAGCAATA GGCTTTCGAATCAAGAAGGGTACATTGACTGATACTCCTGCCATCCTTGTTTTTGTTGCT CGGAAGGTGCACAGGAAGTGGCTCAGCCCTACACAGTGCCTTCCGGCTCACCTTGAGGGA CCGGGGGGAGTGTGGTGTGATGTCGATGTTGTTGAATTCTCTTACTATGGGGCACCAGCA CCAACTCCAAAGGAACAATTGTATGACGAGCTTGTTGATGGTCTGCGTGGTAGTGATCCA TCTATCGGCTCTGGTTCACAGGTAGCTAGCCTTGAAACATATGGTACATTGGGTGCCATT GTGAAGAGTCGAACTGGTAATAAGCAAGTAGGCTTCCTGACAAACAGGCATGTTGCGGTT GACCTGGATTACCCTAACCAGAAGATGTTCCATCCCTTGCCCCCGAATCTTGGGCCTGGT GTATACCTAGGTGCTGTTGAGCGAGCAACATCATTTATCACAGATGATGTTTGGTATGGT ATCTATGCGGGAACAAATCCAGAGACATTTGTCAGAGCTGATGGTGCATTTATACCGTTT GCTGATGATTATGACATAACTAGTGTTAATACCTCAGTCAAAGGAGTTGGAGTCATAGGT GATGTAAAGGCAATCGATCTACAATCCCCAATTAGCAGTCTCATCGGAAGACAGGTTGTC AAAGTTGGAAGAAGCTCTGGTTTGACGACAGGGACCGTTGTGGCATACGCTCTTGAATAC AATGATGAGAAGGGCATATGCTTCTTCACAGACTTTCTTGTTGTTGGGGAGAACCAACAA ACATTTGATCTTGAAGGGGATAGTGGAAGCCTTATAATCTTAACAGGAAAAGATGGCGAA AAGCCACAGCCCATAGGGATTATATGGGGTGGCACAGCCAATCGGGGGAGGTTGAAGCTC AAAAGTGGTCAGGGTCCTGAGAACTGGACAAGTGGGGTTGATCTCGGACGGCTTCTGGAT CTATTGGAGCTTGATCTAATCACTACAAGTGAAGGACTACAAGAGGCCCTAGAGGAACAA CGAATTATTCTAGCTGCTGCTGCAGCAGCAGCTAATTCAACTGCTGGGGAATCGTCACCT GTTGCTGGTCCTCAAGAAAATGAGAAAGTTGACAAGATTTACGAGCCTCTTGGAATCAAC ATCCAACAGCTTCCAAGAGACAATTCAGCCACCTCCACAGGACCCGATGAGTTCCATGTC GACACGGTGGAAGGCGTCACCAACGTCGAGGAGCGCCAATTCCTCATTGGCATGTCTCCA GCACGCGAAGGCCAAGAAGCCAATGGCGACCTGAACAACCTTGCGGAGCTAGAGAATTCA CCTGAAGACATTTGCTTCTCCCTGCATCTGGGCGAGAGGGAGCCCAAGCGACTCCGCTCC GATTCGTCGCTGGACATAGACTTGCAGAAATGA

Peptide Sequence

PEP ID	Os08t0407200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:19463943:19469078:1 gene:Os08g0407200 transcript:Os08t0407200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLANT ARCHITECTURE AND YIELD 1 description:Auxin polar transport and distribution, Plant architecture and grain yield (Os08t0407200-01);Similar to predicted protein. (Os08t0407200-02)
Sequence	MWPSDIWKAHAGSSQSEGSALDMERNGCNHNCCPSPLQPIASGGQHSESSAAYFSWPTST LMHGSAEGRANYFGNLQKGVLPGHLGRLPTGQRATTLLDLMIIRAFHSKILRRFSLGTAI GFRIKKGTLTDTPAILVFVARKVHRKWLSPTQCLPAHLEGPGGVWCDVDVVEFSYYGAPA PTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVAV DLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPF ADDYDITSVNTSVKGVGVIGDVKAIDLQSPISSLIGRQVVKVGRSSGLTTGTVVAYALEY NDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGKDGEKPQPIGIIWGGTANRGRLKL KSGQGPENWTSGVDLGRLLDLLELDLITTSEGLQEALEEQRIILAAAAAAANSTAGESSP VAGPQENEKVDKIYEPLGINIQQLPRDNSATSTGPDEFHVDTVEGVTNVEERQFLIGMSP AREGQEANGDLNNLAELENSPEDICFSLHLGEREPKRLRSDSSLDIDLQK

Transcript Sequence

Transcript ID	Os08t0407200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:19463943:19469078:1 gene:Os08g0407200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLANT ARCHITECTURE AND YIELD 1 description:Auxin polar transport and distribution, Plant architecture and grain yield (Os08t0407200-01);Similar to predicted protein. (Os08t0407200-02)
Sequence	GCTCGTTCTTTCCTCCTCCCCCCAGTTCGTCTCTCTCCCACCCCCCTCACCGGCGCTCTT CCCCCGCGGCAGCAGCCCGGCCGGCCGCCGGCGAGCCCTTCTCTCGCGAGCCGCCCTCCC CTGGACGAGGATGCGTTGACAGCGCCTCCCCCTCCGTTCTTCCCCACAGAAGCGTCCTCC TCCTCCTACTCCTACTACTGGGCTCGTGGACTGGTGGTCCCCCCCCCTCCGACCACCGCC TCCCTCCCCGGCGACGACCATCCATGGAGCTCCACCGCTCTTTCTCCTCCTCCTCCTCCT GCCGCAGTGGTAAAGTTACTCAACAGTGAGGATTTCTAAAGCTCAACAGAACTAGATGAT ACTTGCATAATGTGGCCCTCAGATATTTGGAAGGCGCATGCAGGGTCATCACAGTCAGAG GGATCAGCACTGGATATGGAGAGAAACGGATGCAACCATAACTGTTGCCCATCTCCTCTC CAACCAATTGCATCAGGTGGTCAGCACTCTGAAAGCAGCGCTGCATATTTTTCTTGGCCA ACATCTACTCTAATGCACGGGTCTGCCGAAGGCCGCGCTAATTACTTTGGGAACCTACAG AAGGGTGTGTTACCTGGACATCTTGGCCGCTTGCCAACAGGGCAAAGGGCCACCACCTTG CTTGATTTGATGATTATAAGAGCATTCCACAGCAAGATCCTACGTCGCTTTAGTCTTGGT ACAGCAATAGGCTTTCGAATCAAGAAGGGTACATTGACTGATACTCCTGCCATCCTTGTT TTTGTTGCTCGGAAGGTGCACAGGAAGTGGCTCAGCCCTACACAGTGCCTTCCGGCTCAC CTTGAGGGACCGGGGGGAGTGTGGTGTGATGTCGATGTTGTTGAATTCTCTTACTATGGG GCACCAGCACCAACTCCAAAGGAACAATTGTATGACGAGCTTGTTGATGGTCTGCGTGGT AGTGATCCATCTATCGGCTCTGGTTCACAGGTAGCTAGCCTTGAAACATATGGTACATTG GGTGCCATTGTGAAGAGTCGAACTGGTAATAAGCAAGTAGGCTTCCTGACAAACAGGCAT GTTGCGGTTGACCTGGATTACCCTAACCAGAAGATGTTCCATCCCTTGCCCCCGAATCTT GGGCCTGGTGTATACCTAGGTGCTGTTGAGCGAGCAACATCATTTATCACAGATGATGTT TGGTATGGTATCTATGCGGGAACAAATCCAGAGACATTTGTCAGAGCTGATGGTGCATTT ATACCGTTTGCTGATGATTATGACATAACTAGTGTTAATACCTCAGTCAAAGGAGTTGGA GTCATAGGTGATGTAAAGGCAATCGATCTACAATCCCCAATTAGCAGTCTCATCGGAAGA CAGGTTGTCAAAGTTGGAAGAAGCTCTGGTTTGACGACAGGGACCGTTGTGGCATACGCT CTTGAATACAATGATGAGAAGGGCATATGCTTCTTCACAGACTTTCTTGTTGTTGGGGAG AACCAACAAACATTTGATCTTGAAGGGGATAGTGGAAGCCTTATAATCTTAACAGGAAAA GATGGCGAAAAGCCACAGCCCATAGGGATTATATGGGGTGGCACAGCCAATCGGGGGAGG TTGAAGCTCAAAAGTGGTCAGGGTCCTGAGAACTGGACAAGTGGGGTTGATCTCGGACGG CTTCTGGATCTATTGGAGCTTGATCTAATCACTACAAGTGAAGGACTACAAGAGGCCCTA GAGGAACAACGAATTATTCTAGCTGCTGCTGCAGCAGCAGCTAATTCAACTGCTGGGGAA TCGTCACCTGTTGCTGGTCCTCAAGAAAATGAGAAAGTTGACAAGATTTACGAGCCTCTT GGAATCAACATCCAACAGCTTCCAAGAGACAATTCAGCCACCTCCACAGGACCCGATGAG TTCCATGTCGACACGGTGGAAGGCGTCACCAACGTCGAGGAGCGCCAATTCCTCATTGGC ATGTCTCCAGCACGCGAAGGCCAAGAAGCCAATGGCGACCTGAACAACCTTGCGGAGCTA GAGAATTCACCTGAAGACATTTGCTTCTCCCTGCATCTGGGCGAGAGGGAGCCCAAGCGA CTCCGCTCCGATTCGTCGCTGGACATAGACTTGCAGAAATGAAATGAAGCTGTGTGCTGC TGTTCCATCACCACCCAGCTCTGTATAACCTAGTGAAGGCAGTTCCATTCTATGAACCCA ATAGAAATAAATATGGGCTAGGTATTTGTTTCCGGAAACTATCTAGATAGGTATCCGGAT AATTTCTATCGTTTTCACAGGATACAAGCCTTACTGTATTTGTTTCTGTTTTTAAAAAAT TTTC