Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0401500-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:19157206:19161819:-1 gene:Os08g0401500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HOTHEAD protein precursor (ADHESION OF CALYX EDGES protein). (Os08t0401500-01)
Sequence	ATGGGTTTGATCAATAGAGGGGTCTTCTTCAAGATCTTGGCCTTCCTCTGCTTCATCAGA TCATCTCAAGGAAGAAATCATTTTACCACATTGGATCTCCCTCCCCTACTGAAGGCAAGC AGTTTCTCCAGAATACAGCATGAGGCATATGACTACATCATTGTTGGAGGTGGCACAGCT GGATGCCCATTGGCAGCAACGTTGTCCCAGAAGTACAAGGTGCTCTTGCTGGAAAGAGGA GGGTCTCCTTACGGCAACCGGAACATCTCACATCTTGAGAACTTCCACATTTGCTTGGCA GATGACTCGCCAAATTCACCATCTCAGGGATTTATCTCCACTGATGGTGTCATCAATGCC CGGGCAAAGGTTCTAGGTGGTGGAACTAGTGTCAATGCTGGTTTCTACAGCCGAGCTGAC CCAAGCTTTGTTCAAGACGCAGGCTGGGATGCAGAGTTGGTAAACCAATCATACCCTTGG ATCGAAGAGAGGATTGTTTATTGGCCCAATATTACACCGTGGCAAGCTGCACTGCGGGAC GGGCTGCTTGAAGCAGGGGTCTCACCTTACAATGGATACAGCTATGATCATCTCTTTGGA ACAAAGGTCGGGGGAACAATCTTTGATGAGGCTGGGTACAGGCACACTGCTGCTGACCTC CTTGCTGCTGGAAATCATAACAACCTCAGGGTTCTCCTTCATGCTAGTGTGACCAGAATA ATTTTCAACACAGAACAAGAGCACAGGAAGCCAAGGACCATTGGTGTTGAATTCAAGGAT GAGAATGGGGGGCAGCAGCATGCCTTCCTTACCCGAAACAGAGACAGCGAGATTATCATC TCTGCTGGTGCAATTGGCAGTCCCCAGCTATTGTTGCTTAGTGGAATTGGACCCAGAAAG GAACTTAAAAAGCATAACATTTCTGTAGTCCTTCGCAACGAACATGTGGGTAAAGGGATG TCAGATAATCCAATGAATTCCATCTTTATACCTACCAAGGATGCCCCTAAGCAATCACTG ATTCAGACTGTTGGAATAACCGACGGCGGGGCGTTCATAGAAGCCAGCAGTGGTTTCAGC CAGTCACCAGATAGTATCCAGTGCCACCATGGAATCATGTCCGCTGAGATTGGGCAGCTG TCAACGATTCCCCCAAAGCAAAGAAATCTAGATGCAGTCAAGAAGTATGTACATAAAAAA TATAACCTACCCAAAGAAGTATTCAGTGGGGGTTTTATACTTTCGAAGATTGATGGTCCA TTGTCTACTGGTAATCTAGTTCTTGTGGATACTGACATCAATAGCAACCCCACGGTTACC TTCAACTACTTCCAGCACCCAAAGGATCTCAGTCGGTGTGTCTATGGGATCAAGACCATA GAGAGAATACTGAAGACAAACCATTTCACTAATTTTACCCTCAATGGTGGTGGATATCCA ATGGAAGTGGTGCTCAACATGAGTGTAACAGCAAACATAAACTTGATACCCAAGCACACA AATGACAGCACATCCATGGAGCAGTTTTGCAGAGACACAGTGGTCACCATCTGGCATTAC CATGGCGGATGCCATGTGGGCAAGGTGGTTGACCAACAATACCGTGTGATTGGTGTCTCA GGCCTTCGTGTGATCGATGGGTCGACCTTATTTAGGTCACCAGGAACCAACCCGCAAGCC ACAGTCATGATGATGGGCAGATACATGGGAGTGAAGATTCTAAGAAGAAGATTAGGACGA GCTGCTGGAGTATAA

Peptide Sequence

PEP ID	Os08t0401500-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:19157206:19161819:-1 gene:Os08g0401500 transcript:Os08t0401500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HOTHEAD protein precursor (ADHESION OF CALYX EDGES protein). (Os08t0401500-01)
Sequence	MGLINRGVFFKILAFLCFIRSSQGRNHFTTLDLPPLLKASSFSRIQHEAYDYIIVGGGTA GCPLAATLSQKYKVLLLERGGSPYGNRNISHLENFHICLADDSPNSPSQGFISTDGVINA RAKVLGGGTSVNAGFYSRADPSFVQDAGWDAELVNQSYPWIEERIVYWPNITPWQAALRD GLLEAGVSPYNGYSYDHLFGTKVGGTIFDEAGYRHTAADLLAAGNHNNLRVLLHASVTRI IFNTEQEHRKPRTIGVEFKDENGGQQHAFLTRNRDSEIIISAGAIGSPQLLLLSGIGPRK ELKKHNISVVLRNEHVGKGMSDNPMNSIFIPTKDAPKQSLIQTVGITDGGAFIEASSGFS QSPDSIQCHHGIMSAEIGQLSTIPPKQRNLDAVKKYVHKKYNLPKEVFSGGFILSKIDGP LSTGNLVLVDTDINSNPTVTFNYFQHPKDLSRCVYGIKTIERILKTNHFTNFTLNGGGYP MEVVLNMSVTANINLIPKHTNDSTSMEQFCRDTVVTIWHYHGGCHVGKVVDQQYRVIGVS GLRVIDGSTLFRSPGTNPQATVMMMGRYMGVKILRRRLGRAAGV

Transcript Sequence

Transcript ID	Os08t0401500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:19157206:19161819:-1 gene:Os08g0401500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HOTHEAD protein precursor (ADHESION OF CALYX EDGES protein). (Os08t0401500-01)
Sequence	GTGAGGCAGAACAGAAATCAGAGAACTGAGGACAGAAGGCAAGTAGGAAGAATCTGAGCT GTCTGAATGGAAGGGAAAAACAACTAGGGGGAGAAAAGGAAAGGATTATCCAAGCTTTCG TGTATCATCCGAGTGTCCCTTGTATGCAATGGGTTTGATCAATAGAGGGGTCTTCTTCAA GATCTTGGCCTTCCTCTGCTTCATCAGATCATCTCAAGGAAGAAATCATTTTACCACATT GGATCTCCCTCCCCTACTGAAGGCAAGCAGTTTCTCCAGAATACAGCATGAGGCATATGA CTACATCATTGTTGGAGGTGGCACAGCTGGATGCCCATTGGCAGCAACGTTGTCCCAGAA GTACAAGGTGCTCTTGCTGGAAAGAGGAGGGTCTCCTTACGGCAACCGGAACATCTCACA TCTTGAGAACTTCCACATTTGCTTGGCAGATGACTCGCCAAATTCACCATCTCAGGGATT TATCTCCACTGATGGTGTCATCAATGCCCGGGCAAAGGTTCTAGGTGGTGGAACTAGTGT CAATGCTGGTTTCTACAGCCGAGCTGACCCAAGCTTTGTTCAAGACGCAGGCTGGGATGC AGAGTTGGTAAACCAATCATACCCTTGGATCGAAGAGAGGATTGTTTATTGGCCCAATAT TACACCGTGGCAAGCTGCACTGCGGGACGGGCTGCTTGAAGCAGGGGTCTCACCTTACAA TGGATACAGCTATGATCATCTCTTTGGAACAAAGGTCGGGGGAACAATCTTTGATGAGGC TGGGTACAGGCACACTGCTGCTGACCTCCTTGCTGCTGGAAATCATAACAACCTCAGGGT TCTCCTTCATGCTAGTGTGACCAGAATAATTTTCAACACAGAACAAGAGCACAGGAAGCC AAGGACCATTGGTGTTGAATTCAAGGATGAGAATGGGGGGCAGCAGCATGCCTTCCTTAC CCGAAACAGAGACAGCGAGATTATCATCTCTGCTGGTGCAATTGGCAGTCCCCAGCTATT GTTGCTTAGTGGAATTGGACCCAGAAAGGAACTTAAAAAGCATAACATTTCTGTAGTCCT TCGCAACGAACATGTGGGTAAAGGGATGTCAGATAATCCAATGAATTCCATCTTTATACC TACCAAGGATGCCCCTAAGCAATCACTGATTCAGACTGTTGGAATAACCGACGGCGGGGC GTTCATAGAAGCCAGCAGTGGTTTCAGCCAGTCACCAGATAGTATCCAGTGCCACCATGG AATCATGTCCGCTGAGATTGGGCAGCTGTCAACGATTCCCCCAAAGCAAAGAAATCTAGA TGCAGTCAAGAAGTATGTACATAAAAAATATAACCTACCCAAAGAAGTATTCAGTGGGGG TTTTATACTTTCGAAGATTGATGGTCCATTGTCTACTGGTAATCTAGTTCTTGTGGATAC TGACATCAATAGCAACCCCACGGTTACCTTCAACTACTTCCAGCACCCAAAGGATCTCAG TCGGTGTGTCTATGGGATCAAGACCATAGAGAGAATACTGAAGACAAACCATTTCACTAA TTTTACCCTCAATGGTGGTGGATATCCAATGGAAGTGGTGCTCAACATGAGTGTAACAGC AAACATAAACTTGATACCCAAGCACACAAATGACAGCACATCCATGGAGCAGTTTTGCAG AGACACAGTGGTCACCATCTGGCATTACCATGGCGGATGCCATGTGGGCAAGGTGGTTGA CCAACAATACCGTGTGATTGGTGTCTCAGGCCTTCGTGTGATCGATGGGTCGACCTTATT TAGGTCACCAGGAACCAACCCGCAAGCCACAGTCATGATGATGGGCAGATACATGGGAGT GAAGATTCTAAGAAGAAGATTAGGACGAGCTGCTGGAGTATAACTGATTCTTGGACCTTA TTGATTATGTAAGAATGTGACTTAGGAAAAGAAAAGTATATAGTAATTTTTGAAGCAATT CAATATCATATCACCACAGAAAGAAAATTAGGAGTTTTCGTTTGTGTTCTAGATGTGGAA ATCTATGGCATGTAATATCATCTATTGACACCATTGTTTCTGCATTATGAACAAGTAAAT TATATTACATTG