Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0401100-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:19139675:19142676:1 gene:Os08g0401100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat containing protein. (Os08t0401100-01)
Sequence

ATGGATTCCCCTGTGATTATGGATCCGCAGCTGCTGATGGCTGCACGATCTGGTGCGTGC
AAGGCGCTTGAGAATCTTCTCGTCAACCATGAGGAGGCGGCTGCTGAATCCCATCTCGTC
ATCCGCATGCCGGAGGAGGGAGCTTCAAATACTAGTAGTACTAGTAGTGATCTAGCTCAA
CAAGGTCAACCTGCAAATCGTCCAGCAGCAGCGTCGCCTCTCCTGGAAGGGTTGACTCTT
GATTCGGACCAGGATTCGGCCCTCCATGTGGTGGCCACCTCCGGCGACGGCGAGCAGTAC
GTGCAGTGCGCGGAGATGATCCACGGCAGGGCGAGGCACCTGCTAGGCGCGACCAACAAC
AGAGGCGACACGCCTCTGCACTGCGCCGCCAGAGCCGGGCACCATGCCATGGTCTGCCGT
CTCATCTCGTTGGCCGCGCACGAGGGCGGCGCCGCCAACGGACGGATCCTGAGCACCAGG
AACAAGCTCGGGGAGACGGCGCTACACGGCGCGATCCGCGGCGGCAACAGGATGGTGGTG
GAGAGGCTCGTGTCGGAGGATCCGGAGCTGGCCAGGATTCCGGAGGATCGTGGCATCGGC
GCCTCGCCGCTGTACCTCGCCGTTTCGCTGGGGCGCTTGGAGATTGCACGGGACCTGCTT
GATAGAAGTCCTACAACATTGTCATACTCTGGGCCTGAAGGCCAAAACGTGCTGCATATC
TCGGTATACCGCGGCGAAGCGCTGTCTATACTGTTAGACAAGTGCAAGGATGTTAAGGTC
AACATTGATCAGGGAGGCCGGTATAGGAGTATGCCTGTTCTCTTACACCTTACTAGTCAA
GGCGACAAAAATGGGAGCACTCCGCTTCACTTCGCTGCATCGCTGAAAACTAGTACCACA
GGTTTGTCAAGATGGTCTGAATATTTCCATCCGAAACCAAGTCCAACCACGCTGCTGCTT
GATGCCAATGAATCTGCTATGTACCAACCGGATAACGGAGGATCATATCCTATACATGTT
GCTGCCTCCAATGGGACGCTCAAGGCTGTCATAACCTTGCTCGGAAGGTCCCCTGGCTGC
ATCGCATTGCGGAACATGCAAGGAAAGACTTTCCTCCACGTTGCTGTGGAGAAGAAGAGG
CATAGTATTGTTGCATTTGTGTGCAAAAGGCCCGAACTTGCATCTGTGTTAAATGTGCAG
GACAACCAGGGGGATACCGCGCTGCACCTTGCTGTCAAAGCTGGACTTGTCTCAATTTTC
AACCTCTTGTTTCGGAATAGGGAGGTGAGCTTGAATTTACCAAACAAAGACGGGCTGACA
CCTCGTGATCTTTCATGGATTATGATTCCTGCAAGATTCTACTATAAAAAGAATTCACGA
GGTATGATACACCAATCATTAGCACTTGCCAGAGCTCCAGTTGGTCACAGTCGCCAGGAC
CACTTCTATGAGAAGCATTCAAAGAGGAGGGATGAAGAAATCGATTCAGAGTACTTGACG
AACGCAACTTCAGTTCTCGGCATTTCATCTGTTCTGATTGCAACGGTGACATTTGCAGCA
GCTTTCACGTTACCTGGGGGATACAGAGCAGACGACCACGCGAACGGCGGGACACCGACG
CTTGCTGGGAGCTACTCCTTCAACGCATTCATCACCGCAAACACGCTAGCATTCAGTTGC
TCTCTGCTAGCTACCGTCAGCCTGCTCTACTCTGGGATGCCGTCGCGGGAGATCTCCATC
CGCTACGTATACCAGTCCCTATCGTTGGTCATGATGCGGAGCTCAGCTACAAGCCTGGTC
GCCGCCTTCGCCTTGGGCATGTACGTCGTGCTAGCTCCCGTTGCTCTCACCATGGCAAAG
TCTGTCTGCGCCATCACTTTTCTCTCCTTCTTGTCTGCATGTATGGAGGTCCGGAGGCCC
CTTATCGTGGCAAACTCGGTGCGTATTAGAGTTGGAATCTGGGCAGCGAGGTATCAAGCA
GCGCCAGTCCTAAAATTCATCGGGAAAAGATTCTGGTCCTATGTAATTATCTTTGGCTTG
CCGGCGGTGTTGAAGATTCGTGGAACCCAATGA

Peptide Sequence

PEP ID

Os08t0401100-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:19139675:19142676:1 gene:Os08g0401100 transcript:Os08t0401100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat containing protein. (Os08t0401100-01)
Sequence

MDSPVIMDPQLLMAARSGACKALENLLVNHEEAAAESHLVIRMPEEGASNTSSTSSDLAQ
QGQPANRPAAASPLLEGLTLDSDQDSALHVVATSGDGEQYVQCAEMIHGRARHLLGATNN
RGDTPLHCAARAGHHAMVCRLISLAAHEGGAANGRILSTRNKLGETALHGAIRGGNRMVV
ERLVSEDPELARIPEDRGIGASPLYLAVSLGRLEIARDLLDRSPTTLSYSGPEGQNVLHI
SVYRGEALSILLDKCKDVKVNIDQGGRYRSMPVLLHLTSQGDKNGSTPLHFAASLKTSTT
GLSRWSEYFHPKPSPTTLLLDANESAMYQPDNGGSYPIHVAASNGTLKAVITLLGRSPGC
IALRNMQGKTFLHVAVEKKRHSIVAFVCKRPELASVLNVQDNQGDTALHLAVKAGLVSIF
NLLFRNREVSLNLPNKDGLTPRDLSWIMIPARFYYKKNSRGMIHQSLALARAPVGHSRQD
HFYEKHSKRRDEEIDSEYLTNATSVLGISSVLIATVTFAAAFTLPGGYRADDHANGGTPT
LAGSYSFNAFITANTLAFSCSLLATVSLLYSGMPSREISIRYVYQSLSLVMMRSSATSLV
AAFALGMYVVLAPVALTMAKSVCAITFLSFLSACMEVRRPLIVANSVRIRVGIWAARYQA
APVLKFIGKRFWSYVIIFGLPAVLKIRGTQ

Transcript Sequence

Transcript ID

Os08t0401100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:19139675:19142676:1 gene:Os08g0401100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat containing protein. (Os08t0401100-01)
Sequence

GCACTGCTATCGCCCTAAACGATCTCCCTCTCCAGAGCACGATTGGCGTGGTGTCGCGAT
GGATTCCCCTGTGATTATGGATCCGCAGCTGCTGATGGCTGCACGATCTGGTGCGTGCAA
GGCGCTTGAGAATCTTCTCGTCAACCATGAGGAGGCGGCTGCTGAATCCCATCTCGTCAT
CCGCATGCCGGAGGAGGGAGCTTCAAATACTAGTAGTACTAGTAGTGATCTAGCTCAACA
AGGTCAACCTGCAAATCGTCCAGCAGCAGCGTCGCCTCTCCTGGAAGGGTTGACTCTTGA
TTCGGACCAGGATTCGGCCCTCCATGTGGTGGCCACCTCCGGCGACGGCGAGCAGTACGT
GCAGTGCGCGGAGATGATCCACGGCAGGGCGAGGCACCTGCTAGGCGCGACCAACAACAG
AGGCGACACGCCTCTGCACTGCGCCGCCAGAGCCGGGCACCATGCCATGGTCTGCCGTCT
CATCTCGTTGGCCGCGCACGAGGGCGGCGCCGCCAACGGACGGATCCTGAGCACCAGGAA
CAAGCTCGGGGAGACGGCGCTACACGGCGCGATCCGCGGCGGCAACAGGATGGTGGTGGA
GAGGCTCGTGTCGGAGGATCCGGAGCTGGCCAGGATTCCGGAGGATCGTGGCATCGGCGC
CTCGCCGCTGTACCTCGCCGTTTCGCTGGGGCGCTTGGAGATTGCACGGGACCTGCTTGA
TAGAAGTCCTACAACATTGTCATACTCTGGGCCTGAAGGCCAAAACGTGCTGCATATCTC
GGTATACCGCGGCGAAGCGCTGTCTATACTGTTAGACAAGTGCAAGGATGTTAAGGTCAA
CATTGATCAGGGAGGCCGGTATAGGAGTATGCCTGTTCTCTTACACCTTACTAGTCAAGG
CGACAAAAATGGGAGCACTCCGCTTCACTTCGCTGCATCGCTGAAAACTAGTACCACAGG
TTTGTCAAGATGGTCTGAATATTTCCATCCGAAACCAAGTCCAACCACGCTGCTGCTTGA
TGCCAATGAATCTGCTATGTACCAACCGGATAACGGAGGATCATATCCTATACATGTTGC
TGCCTCCAATGGGACGCTCAAGGCTGTCATAACCTTGCTCGGAAGGTCCCCTGGCTGCAT
CGCATTGCGGAACATGCAAGGAAAGACTTTCCTCCACGTTGCTGTGGAGAAGAAGAGGCA
TAGTATTGTTGCATTTGTGTGCAAAAGGCCCGAACTTGCATCTGTGTTAAATGTGCAGGA
CAACCAGGGGGATACCGCGCTGCACCTTGCTGTCAAAGCTGGACTTGTCTCAATTTTCAA
CCTCTTGTTTCGGAATAGGGAGGTGAGCTTGAATTTACCAAACAAAGACGGGCTGACACC
TCGTGATCTTTCATGGATTATGATTCCTGCAAGATTCTACTATAAAAAGAATTCACGAGG
TATGATACACCAATCATTAGCACTTGCCAGAGCTCCAGTTGGTCACAGTCGCCAGGACCA
CTTCTATGAGAAGCATTCAAAGAGGAGGGATGAAGAAATCGATTCAGAGTACTTGACGAA
CGCAACTTCAGTTCTCGGCATTTCATCTGTTCTGATTGCAACGGTGACATTTGCAGCAGC
TTTCACGTTACCTGGGGGATACAGAGCAGACGACCACGCGAACGGCGGGACACCGACGCT
TGCTGGGAGCTACTCCTTCAACGCATTCATCACCGCAAACACGCTAGCATTCAGTTGCTC
TCTGCTAGCTACCGTCAGCCTGCTCTACTCTGGGATGCCGTCGCGGGAGATCTCCATCCG
CTACGTATACCAGTCCCTATCGTTGGTCATGATGCGGAGCTCAGCTACAAGCCTGGTCGC
CGCCTTCGCCTTGGGCATGTACGTCGTGCTAGCTCCCGTTGCTCTCACCATGGCAAAGTC
TGTCTGCGCCATCACTTTTCTCTCCTTCTTGTCTGCATGTATGGAGGTCCGGAGGCCCCT
TATCGTGGCAAACTCGGTGCGTATTAGAGTTGGAATCTGGGCAGCGAGGTATCAAGCAGC
GCCAGTCCTAAAATTCATCGGGAAAAGATTCTGGTCCTATGTAATTATCTTTGGCTTGCC
GGCGGTGTTGAAGATTCGTGGAACCCAATGACTTTGTGTAATTATCTTATCTGCTAATAA
GATTATCTTTCGCCGGGCTCTGCCTCTGTTAATGAGACTAGATGAGATAAAGGCATTTTT
GCAAAATAGAAGCATATGCAAGATACAATATGTCCAAAACATTGTATTCACATGTTAAAC
AAAATATATAATGGGCTGAGGG