Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0388900-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:18371708:18379608:1 gene:Os08g0388900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to para-hydroxybenzoate--polyprenyltransferase. (Os08t0388900-00)
Sequence

ATGGCGTTCCTCCGCGCCGCCGACCTCGTCCGCCGCCACCGCCGTGTCCCGCATGCTAGT
CTGATCCTCCACCCCGCCCTCTTGCCGCCGCCGCCGCCACCAAGCATGGAGTCCTTCCCC
GACGGTCCCAGTACTCCTGGCCCCGTCGCCCGAAACGACATCTTCGCCGCCACACTATGC
CACCGCCACCGTCATCGCCGGTGGCCGCGTCCGCTAATTCCAATCTCCTCTTCTTCCTAT
GATGGCAGTGGGGCCCGGCTTCCCGCAACCGTGTCGTTGTACTCGCACCTCTCCAGCACC
AGCTCGGGCGCCGGTGGGGATTCCACGCCTCCTCCGCAACAGTCGCCGCAGGCGAAGCCA
CCTCCTCCGTCGTGGGTGGACAGGTGGGTCCCACTGGCGGCACGGCCATATGCCATGCTC
GCCCGCATCGACAAGCCCATTGGCACCTGGCTCCTTGCGTGGCCCAGCTTCTGGTCAATC
GCGATGGCAGCGATGCCAGGGGAGCTGCCGGACATGAGGATGCTGGCGCTGTTCGCGTGT
GGATCCGTGCTCATCAGAGGCGCCGGATGCACAATCAACGATCTTCTTGATCGAGATATT
GATAGAAAGGTTGAGCGTACCAAAAGCAGGCCTCTTGCATCAGGTATTCTAACACCTACG
CAAGGAGTGGGTTTCCTCGGATTCCAGCTTTTACTGGGATTACCAATTCTTCTCCAACTA
AATAACTTAAGCCAAATACTTGGGGTATTTTCACTTCTTTTGGTCTTCTCTTATCCCCTG
ATGAAGAGGTTCACATATTGGCCTCAGGCATATCTTGGCTTGGTATTCAACTGGGGAGCT
TTGATAGGATGGGCTGCCATGAAAGGAACCATAGATCCAGCCATCATCCTTCCGCTGTAT
ACAGCTGGTATATGCTGGACACTGGTGTATGATACCATATATGCACATCAGGATAAAGAA
GATGACGTCAAAGTAGGAGTCAAGTCCACAGCATTAAGGTTTGGAGATTCAACCAAGCCC
TGGATCAGTGGATTTGGTGCTGCATGCATTGCCAATTTAGCACTCAGTGGCTATAATGCT
GACCTTGCATGGCCTTACTACCCTTTTCTGGCAGCTGCATCTGCGCACTTAGCATGGCAA
GTTTCAACTGTTGATTTATCTGACCGCCTAGATTGCAACAGGAAATTTGTGTCCAATAAG
TGGTTTGGAGCTTTGATATTTGGTGGAATTCTATGTGGACGACTTGTATCATGA

Peptide Sequence

PEP ID

Os08t0388900-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:18371708:18379608:1 gene:Os08g0388900 transcript:Os08t0388900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to para-hydroxybenzoate--polyprenyltransferase. (Os08t0388900-00)
Sequence

MAFLRAADLVRRHRRVPHASLILHPALLPPPPPPSMESFPDGPSTPGPVARNDIFAATLC
HRHRHRRWPRPLIPISSSSYDGSGARLPATVSLYSHLSSTSSGAGGDSTPPPQQSPQAKP
PPPSWVDRWVPLAARPYAMLARIDKPIGTWLLAWPSFWSIAMAAMPGELPDMRMLALFAC
GSVLIRGAGCTINDLLDRDIDRKVERTKSRPLASGILTPTQGVGFLGFQLLLGLPILLQL
NNLSQILGVFSLLLVFSYPLMKRFTYWPQAYLGLVFNWGALIGWAAMKGTIDPAIILPLY
TAGICWTLVYDTIYAHQDKEDDVKVGVKSTALRFGDSTKPWISGFGAACIANLALSGYNA
DLAWPYYPFLAAASAHLAWQVSTVDLSDRLDCNRKFVSNKWFGALIFGGILCGRLVS

Transcript Sequence

Transcript ID

Os08t0388900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:18371708:18379608:1 gene:Os08g0388900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to para-hydroxybenzoate--polyprenyltransferase. (Os08t0388900-00)
Sequence

ATGGCGTTCCTCCGCGCCGCCGACCTCGTCCGCCGCCACCGCCGTGTCCCGCATGCTAGT
CTGATCCTCCACCCCGCCCTCTTGCCGCCGCCGCCGCCACCAAGCATGGAGTCCTTCCCC
GACGGTCCCAGTACTCCTGGCCCCGTCGCCCGAAACGACATCTTCGCCGCCACACTATGC
CACCGCCACCGTCATCGCCGGTGGCCGCGTCCGCTAATTCCAATCTCCTCTTCTTCCTAT
GATGGCAGTGGGGCCCGGCTTCCCGCAACCGTGTCGTTGTACTCGCACCTCTCCAGCACC
AGCTCGGGCGCCGGTGGGGATTCCACGCCTCCTCCGCAACAGTCGCCGCAGGCGAAGCCA
CCTCCTCCGTCGTGGGTGGACAGGTGGGTCCCACTGGCGGCACGGCCATATGCCATGCTC
GCCCGCATCGACAAGCCCATTGGCACCTGGCTCCTTGCGTGGCCCAGCTTCTGGTCAATC
GCGATGGCAGCGATGCCAGGGGAGCTGCCGGACATGAGGATGCTGGCGCTGTTCGCGTGT
GGATCCGTGCTCATCAGAGGCGCCGGATGCACAATCAACGATCTTCTTGATCGAGATATT
GATAGAAAGGTTGAGCGTACCAAAAGCAGGCCTCTTGCATCAGGTATTCTAACACCTACG
CAAGGAGTGGGTTTCCTCGGATTCCAGCTTTTACTGGGATTACCAATTCTTCTCCAACTA
AATAACTTAAGCCAAATACTTGGGGTATTTTCACTTCTTTTGGTCTTCTCTTATCCCCTG
ATGAAGAGGTTCACATATTGGCCTCAGGCATATCTTGGCTTGGTATTCAACTGGGGAGCT
TTGATAGGATGGGCTGCCATGAAAGGAACCATAGATCCAGCCATCATCCTTCCGCTGTAT
ACAGCTGGTATATGCTGGACACTGGTGTATGATACCATATATGCACATCAGGATAAAGAA
GATGACGTCAAAGTAGGAGTCAAGTCCACAGCATTAAGGTTTGGAGATTCAACCAAGCCC
TGGATCAGTGGATTTGGTGCTGCATGCATTGCCAATTTAGCACTCAGTGGCTATAATGCT
GACCTTGCATGGCCTTACTACCCTTTTCTGGCAGCTGCATCTGCGCACTTAGCATGGCAA
GTTTCAACTGTTGATTTATCTGACCGCCTAGATTGCAACAGGAAATTTGTGTCCAATAAG
TGGTTTGGAGCTTTGATATTTGGTGGAATTCTATGTGGACGACTTGTATCATGATAGATA
TCAGGCATGGATGCATGATTTTTCAGAGTGTTGTTTCCTATGGAGCATTGAAAATTTTGA
TAGCACAGAGACTAACTTGTGACTTCTGAATTACCATAT