Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0387400-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:18305366:18309363:1 gene:Os08g0387400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9B13 description:Similar to Cellulase (Fragment). (Os08t0387400-01)
Sequence	ATGGCTGCTGGCATGGTGGCGACAATGGTGCTACTGACGTGCCTTGCTGCAGGAGGGCTG GTCGTCGGAGCTGAGGAAGACGGTGGCGGCGGCGGTCTTGGCCGGCTGGGGTCGCCGGAC TACGGCGACGCGCTGGCGAAGGCCATCCTGTTCTTCGAGGGACAGCGGTCGGGGCGGCTG CCGGCGAACCAGCGAGCGACGTGGCGCGGGGACTCGGCGCTCACCGATGGCCGTGAAGAA AACGTGAACCTGACCGGCGGCTACTACGACGCCGGCGACAACGTCAAGTTCGGGTACCCG ATGGCGTTCACGGTGACCCTGCTGGGCTGGAGCGCCGTCGAGTACGGCGCCGCCGTCGCG GCGGCGGGGGAGCTCGGCAACCTCCGGGCGGCGATCCGGTGGGGCGCCGACTTCCTCCTC CGCGCCCACGCCTCGCCGACGACGCTCTACACCCAGGTCGGCGACGGCAACGCCGACCAC CAGTGCTGGGAGCGGCCGGAGGACATGGACACGCCCAGGACGCTCTACAAGATCACCGCC GACTCGCCGGGGTCCGAGGCCGCCGCCGAGGCCTCGGCGGCGCTCGCCGCCGCGTACGTC GCGCTCAAGGACGACGGTGACACCGCCTTCTCGTCGCGGCTCCTGGCCGCGTCAAGATCG CTGTTCGATTTCGCCAACAACTACAGGGGATCATTCCAGTCCTCCTGCCCCTTCTACTGC TCCTACTCTGGATTTCAGGATGAGCTCCTCTGGGCCTCAGCGTGGCTCTTCAAGGCGACG CGAGACGCCAAGTACCTCGACTTCCTGACAAACAACCAAGGATCCAGCAACCCTGTCAAT GAGTTCAGCTGGGACAACAAGTATGCCGGAGCACAGATGCTTGCAGCACAGGAGTACTTG GGAGGGAGAACACAGCTAGCAAGGTACAAGGATAACTTGGATTCCTTTGTATGTGCCCTC ATGCCTAACAGTGGCAATGTGCAGATAAGGACCACTCCTGGCGGACTTCTGTTTACGCGC GATTCGGTCAATTTACAGTACACAACAACTGCGACCCTCGTTCTGTCCATCTACTCCAAG GTGCTCAAGTCTTCTGGCTCCAGGGGAGTTCGCTGTAGCGCTGCAACATTCTCTCCAAAT CAGATCAGCTCATTTGCCACGTCTCAGGTGGATTACATCCTGGGGAAGAACCCTCTGGGC ATGTCATACATGGTAGGGTTCAGCACAAAGTTTCCGAGGCGCATTCATCACCGTGGCTCG TCCATCCCGTCGATCAAAGTTCTCAGCAGGAAGGTCACCTGCAAGGAAGGGTTCTCATCA TGGTTACCGACAAGCGACCCAAACCCTAACATCCATGTCGGAGCGATTGTCGGTGGACCA GATGGAAATGATCAGTTCAGTGACAACAGGGGGGATTCATCACACTCTGAGCCAGCCACA TACATCAATGCAGCCTTTGTGGGTGCCTGTGCTGCTGCAATGGGGCAGAAGCAGGTGGTG AAGCTGGAGGAGCCTGCGGACAACTTAGAATCAATGGTATCAACTTACTAG

Peptide Sequence

PEP ID	Os08t0387400-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:18305366:18309363:1 gene:Os08g0387400 transcript:Os08t0387400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9B13 description:Similar to Cellulase (Fragment). (Os08t0387400-01)
Sequence	MAAGMVATMVLLTCLAAGGLVVGAEEDGGGGGLGRLGSPDYGDALAKAILFFEGQRSGRL PANQRATWRGDSALTDGREENVNLTGGYYDAGDNVKFGYPMAFTVTLLGWSAVEYGAAVA AAGELGNLRAAIRWGADFLLRAHASPTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITA DSPGSEAAAEASAALAAAYVALKDDGDTAFSSRLLAASRSLFDFANNYRGSFQSSCPFYC SYSGFQDELLWASAWLFKATRDAKYLDFLTNNQGSSNPVNEFSWDNKYAGAQMLAAQEYL GGRTQLARYKDNLDSFVCALMPNSGNVQIRTTPGGLLFTRDSVNLQYTTTATLVLSIYSK VLKSSGSRGVRCSAATFSPNQISSFATSQVDYILGKNPLGMSYMVGFSTKFPRRIHHRGS SIPSIKVLSRKVTCKEGFSSWLPTSDPNPNIHVGAIVGGPDGNDQFSDNRGDSSHSEPAT YINAAFVGACAAAMGQKQVVKLEEPADNLESMVSTY

Transcript Sequence

Transcript ID	Os08t0387400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:18305366:18309363:1 gene:Os08g0387400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9B13 description:Similar to Cellulase (Fragment). (Os08t0387400-01)
Sequence	GCATCACAAGATCATCAACTAAGCGAAGAACACACACACAAACACAAACAGAAAAACACA ACACATTAAGCTAGCTAGAAGAAGAGAGAAATTAAAGAAGCTAGGAGCTAACGATCAGGA TGGCTGCTGGCATGGTGGCGACAATGGTGCTACTGACGTGCCTTGCTGCAGGAGGGCTGG TCGTCGGAGCTGAGGAAGACGGTGGCGGCGGCGGTCTTGGCCGGCTGGGGTCGCCGGACT ACGGCGACGCGCTGGCGAAGGCCATCCTGTTCTTCGAGGGACAGCGGTCGGGGCGGCTGC CGGCGAACCAGCGAGCGACGTGGCGCGGGGACTCGGCGCTCACCGATGGCCGTGAAGAAA ACGTGAACCTGACCGGCGGCTACTACGACGCCGGCGACAACGTCAAGTTCGGGTACCCGA TGGCGTTCACGGTGACCCTGCTGGGCTGGAGCGCCGTCGAGTACGGCGCCGCCGTCGCGG CGGCGGGGGAGCTCGGCAACCTCCGGGCGGCGATCCGGTGGGGCGCCGACTTCCTCCTCC GCGCCCACGCCTCGCCGACGACGCTCTACACCCAGGTCGGCGACGGCAACGCCGACCACC AGTGCTGGGAGCGGCCGGAGGACATGGACACGCCCAGGACGCTCTACAAGATCACCGCCG ACTCGCCGGGGTCCGAGGCCGCCGCCGAGGCCTCGGCGGCGCTCGCCGCCGCGTACGTCG CGCTCAAGGACGACGGTGACACCGCCTTCTCGTCGCGGCTCCTGGCCGCGTCAAGATCGC TGTTCGATTTCGCCAACAACTACAGGGGATCATTCCAGTCCTCCTGCCCCTTCTACTGCT CCTACTCTGGATTTCAGGATGAGCTCCTCTGGGCCTCAGCGTGGCTCTTCAAGGCGACGC GAGACGCCAAGTACCTCGACTTCCTGACAAACAACCAAGGATCCAGCAACCCTGTCAATG AGTTCAGCTGGGACAACAAGTATGCCGGAGCACAGATGCTTGCAGCACAGGAGTACTTGG GAGGGAGAACACAGCTAGCAAGGTACAAGGATAACTTGGATTCCTTTGTATGTGCCCTCA TGCCTAACAGTGGCAATGTGCAGATAAGGACCACTCCTGGCGGACTTCTGTTTACGCGCG ATTCGGTCAATTTACAGTACACAACAACTGCGACCCTCGTTCTGTCCATCTACTCCAAGG TGCTCAAGTCTTCTGGCTCCAGGGGAGTTCGCTGTAGCGCTGCAACATTCTCTCCAAATC AGATCAGCTCATTTGCCACGTCTCAGGTGGATTACATCCTGGGGAAGAACCCTCTGGGCA TGTCATACATGGTAGGGTTCAGCACAAAGTTTCCGAGGCGCATTCATCACCGTGGCTCGT CCATCCCGTCGATCAAAGTTCTCAGCAGGAAGGTCACCTGCAAGGAAGGGTTCTCATCAT GGTTACCGACAAGCGACCCAAACCCTAACATCCATGTCGGAGCGATTGTCGGTGGACCAG ATGGAAATGATCAGTTCAGTGACAACAGGGGGGATTCATCACACTCTGAGCCAGCCACAT ACATCAATGCAGCCTTTGTGGGTGCCTGTGCTGCTGCAATGGGGCAGAAGCAGGTGGTGA AGCTGGAGGAGCCTGCGGACAACTTAGAATCAATGGTATCAACTTACTAGAAAAGAGGGA TGCAGAAAATATATGCAAGAATAAGATCATTATTATGTATTCATGTGCAACTTCTATGTG TGAGATTGCCTTGTAACATCAGTGCTTACTTGTAATATATCCCAGCTCCTTATCAGTGTG TACAACATGATAATAAATAAATACCATAAGTTCATACC