Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0380100-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:17904247:17906373:1 gene:Os08g0380100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BURP domain-containing protein 12 description:Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment). (Os08t0380100-01);Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment). (Os08t0380100-02)
Sequence	ATGGCGTCTCCTCCCCACCTCCCCCTCCTCCTCCTCCTCCTCGTCGTCGTCTGCAATGCC GCCGGCGGCGACGGTGCCAGGGTGAACCCGTTCACGGCGAAGGCGGCGTTCATCCGGTAC TGGAACCGGCGGGTGCCCAACAACCGCCCCCACCCGGCCTTCTTCGTCGCCAAGCTCTCC CCGCTCCAGGCCGCCGACGCCGCCTCCTTCGCAGCCGCGCTCCCGCGGCTTCTCCCGCCG CTCTGCGCCAGGGCCGCCCTGCTCTGCCCCTCCGCCTCCGACACCGAGACGGCCGCCTCC CTCGCCGTCGGCGGCGGCGGAGGTGGTGGGCCGTTTAAGGGGTATAGTAATGCCAACTTC ACCAACTACGGCAGCGGCGGCGTGGGCGGCGCCGACGGGTTCAGCGCCTACTCCCCCGAC CTCAACGTCGTCGGCGACTCGTTCCGGCGGTACGGCCGCGACTCGACGCGGAGGGTGGAC ACGTTCGCCAGCTACGAGGCGGAGGGGAACGTGGTCACCGCCAACTTCACCTCCTACGCC GGCGCCGCCACGGGCGGGTCGGGCTCATTCTCCGCCTACGCCGCCGACACCAACGTGCCG GACTCCACCTTCACCAACTACGACGCCGAGGCCAACGGCCGCCGCCGCGAGTTCACCTCC TACTCCCAGGAGGCCAACCACGGGTCGAACACCTTCGCCGGCTACGGCAAGAACGGCAAC GGCCTCAGGGAGACCTTCACCACCTACGGCAACGACTCCAACGTCATCGCCTCCGGCTTC ACCAACTACGGCGAGTCCGGCAACGGCGCCACCGACACCTTCACCGCCTACGGCAAAGAG GGGAACGTCCCCGACAACACCTTCCGGAGCTACGGCGCCGGCGGCAATGCCGGCGTCGAC ACCTTCAAGGGCTACCGCTCCGAGTCCAATGTCGGCGACGACAGCTTCGCCTCCTACGCC AAGGGCGCCAACGGCAACGCCGCCGAGTTCCAGAACTATGGCGGCTCATTCAACCCCGGC ACCGTCACCTTCAAAGGCTACGGCGAAGGGAGCAACCCCAATCACCACATTGGCTTCAAG GAGTATGCCGGGAGCAACAATTCATTCAAGGGGTATGCCAAGTCCGGCGTCGATTTCAAG GAGTACCACAACACGTCGTCGGCAGACGCGGCGACGACGATGTCATTGGAGGCGGTGTCG TCCGGCCACCAGCATTTGAAGTGGTCGCCGGAGCCAGGGAAGTTCTTTAGGGAGACGGAG CTGGTGTCCGGGAACACAATGCCGATGCCTGACATCAAGGACAAGATGCCACCCAGGGCA TTCCTACCAAGGGACATTGCCAAGAAGATACCATTCAAGCCGAATGCGGTGTCGGAGGTG TTCGGGGTGCCGTTGGACACTGCAATGGGGAAGGCGGTCACGTCCACGGTGGCTGAGTGC GAGCGAGCGCCGAGCCGGGGTGAGACCAAGCGGTGTGCAACCTCAGCTGAGGACATTGTG GACTTTGCCGTGGAGATGCTAGGCAATGACATTGTTGTGCGCAGCACGGCCTCCACGGCT GGAAGTGGCGGGCAAATCAGGCTCGGCAATGTTACCGGTGTTGATGGTGGCAAGGTGACC CGGTCCGTATCGTGTCACCAGAGCTTGTTCCCGTATCTGGTGTACTACTGCCACTCGGTG CCGAAGGTGCGGGTGTATGAGGCCGATATCATGGCTGCCGACTCCGATCAGAAGATCAAT CATGGGGTGGCAATTTGTCACCTCGATACTTCTGATTGGAGCCCAACCCATGGAGCGTTC ATCGCGCTTGGTGGAAAACCCGGTGAGGTTGAGGTTTGTCACTGGATCTTCGAGGGTGAC ATGACATGGACAGTCGCGGATTAA

Peptide Sequence

PEP ID	Os08t0380100-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:17904247:17906373:1 gene:Os08g0380100 transcript:Os08t0380100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BURP domain-containing protein 12 description:Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment). (Os08t0380100-01);Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment). (Os08t0380100-02)
Sequence	MASPPHLPLLLLLLVVVCNAAGGDGARVNPFTAKAAFIRYWNRRVPNNRPHPAFFVAKLS PLQAADAASFAAALPRLLPPLCARAALLCPSASDTETAASLAVGGGGGGGPFKGYSNANF TNYGSGGVGGADGFSAYSPDLNVVGDSFRRYGRDSTRRVDTFASYEAEGNVVTANFTSYA GAATGGSGSFSAYAADTNVPDSTFTNYDAEANGRRREFTSYSQEANHGSNTFAGYGKNGN GLRETFTTYGNDSNVIASGFTNYGESGNGATDTFTAYGKEGNVPDNTFRSYGAGGNAGVD TFKGYRSESNVGDDSFASYAKGANGNAAEFQNYGGSFNPGTVTFKGYGEGSNPNHHIGFK EYAGSNNSFKGYAKSGVDFKEYHNTSSADAATTMSLEAVSSGHQHLKWSPEPGKFFRETE LVSGNTMPMPDIKDKMPPRAFLPRDIAKKIPFKPNAVSEVFGVPLDTAMGKAVTSTVAEC ERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVT RSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAF IALGGKPGEVEVCHWIFEGDMTWTVAD

Transcript Sequence

Transcript ID	Os08t0380100-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:17904247:17906373:1 gene:Os08g0380100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BURP domain-containing protein 12 description:Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment). (Os08t0380100-01);Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment). (Os08t0380100-02)
Sequence	CCCCCCCAAATCTGCACCACCGCCGCGCCGCAATGGCGTCTCCTCCCCACCTCCCCCTCC TCCTCCTCCTCCTCGTCGTCGTCTGCAATGCCGCCGGCGGCGACGGTGCCAGGGTGAACC CGTTCACGGCGAAGGCGGCGTTCATCCGGTACTGGAACCGGCGGGTGCCCAACAACCGCC CCCACCCGGCCTTCTTCGTCGCCAAGCTCTCCCCGCTCCAGGCCGCCGACGCCGCCTCCT TCGCAGCCGCGCTCCCGCGGCTTCTCCCGCCGCTCTGCGCCAGGGCCGCCCTGCTCTGCC CCTCCGCCTCCGACACCGAGACGGCCGCCTCCCTCGCCGTCGGCGGCGGCGGAGGTGGTG GGCCGTTTAAGGGGTATAGTAATGCCAACTTCACCAACTACGGCAGCGGCGGCGTGGGCG GCGCCGACGGGTTCAGCGCCTACTCCCCCGACCTCAACGTCGTCGGCGACTCGTTCCGGC GGTACGGCCGCGACTCGACGCGGAGGGTGGACACGTTCGCCAGCTACGAGGCGGAGGGGA ACGTGGTCACCGCCAACTTCACCTCCTACGCCGGCGCCGCCACGGGCGGGTCGGGCTCAT TCTCCGCCTACGCCGCCGACACCAACGTGCCGGACTCCACCTTCACCAACTACGACGCCG AGGCCAACGGCCGCCGCCGCGAGTTCACCTCCTACTCCCAGGAGGCCAACCACGGGTCGA ACACCTTCGCCGGCTACGGCAAGAACGGCAACGGCCTCAGGGAGACCTTCACCACCTACG GCAACGACTCCAACGTCATCGCCTCCGGCTTCACCAACTACGGCGAGTCCGGCAACGGCG CCACCGACACCTTCACCGCCTACGGCAAAGAGGGGAACGTCCCCGACAACACCTTCCGGA GCTACGGCGCCGGCGGCAATGCCGGCGTCGACACCTTCAAGGGCTACCGCTCCGAGTCCA ATGTCGGCGACGACAGCTTCGCCTCCTACGCCAAGGGCGCCAACGGCAACGCCGCCGAGT TCCAGAACTATGGCGGCTCATTCAACCCCGGCACCGTCACCTTCAAAGGCTACGGCGAAG GGAGCAACCCCAATCACCACATTGGCTTCAAGGAGTATGCCGGGAGCAACAATTCATTCA AGGGGTATGCCAAGTCCGGCGTCGATTTCAAGGAGTACCACAACACGTCGTCGGCAGACG CGGCGACGACGATGTCATTGGAGGCGGTGTCGTCCGGCCACCAGCATTTGAAGTGGTCGC CGGAGCCAGGGAAGTTCTTTAGGGAGACGGAGCTGGTGTCCGGGAACACAATGCCGATGC CTGACATCAAGGACAAGATGCCACCCAGGGCATTCCTACCAAGGGACATTGCCAAGAAGA TACCATTCAAGCCGAATGCGGTGTCGGAGGTGTTCGGGGTGCCGTTGGACACTGCAATGG GGAAGGCGGTCACGTCCACGGTGGCTGAGTGCGAGCGAGCGCCGAGCCGGGGTGAGACCA AGCGGTGTGCAACCTCAGCTGAGGACATTGTGGACTTTGCCGTGGAGATGCTAGGCAATG ACATTGTTGTGCGCAGCACGGCCTCCACGGCTGGAAGTGGCGGGCAAATCAGGCTCGGCA ATGTTACCGGTGTTGATGGTGGCAAGGTGACCCGGTCCGTATCGTGTCACCAGAGCTTGT TCCCGTATCTGGTGTACTACTGCCACTCGGTGCCGAAGGTGCGGGTGTATGAGGCCGATA TCATGGCTGCCGACTCCGATCAGAAGATCAATCATGGGGTGGCAATTTGTCACCTCGATA CTTCTGATTGGAGCCCAACCCATGGAGCGTTCATCGCGCTTGGTGGAAAACCCGGTGAGG TTGAGGTTTGTCACTGGATCTTCGAGGGTGACATGACATGGACAGTCGCGGATTAATGCG ATCAAAACCATCTTATTAACCGGTCAATCTTCCTCTTGCCAAACTAAGAAGAGTTCTTTT TCCTATGCTTGATTTTTCTTCTTTTGCAACCATAAGGGTTTAAGAATTGTGCAATGTGTG TAGGAGAAAAGTGCTGGTTCATCACCAAATGTAAACAGTATATCCCGGAAATTTGGGGGA GTTGTGCGTAATTTGATTGTCTTGATC