Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0345800-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:15666389:15672583:-1 gene:Os08g0345800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2 description:Similar to Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosphate adenyl transferase). (Os08t0345800-01);Similar to Glucose-1-phosphate adenylyltransferase. (Os08t0345800-02);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-03);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-04)
Sequence	ATGAATGTATTGGCATCTAAGATCTTCCCTTCCCGCTCCAATGTTGCCAGCGAGCAACAA CAATCGAAGCGCGAGAAAGCAACTATTGATGACGCTAAGAACTCGTCCAAGAACAAAAAT CTTGACCGCAGTGTCGATGAGAGTGTGCTTGGAATCATTCTTGGAGGTGGTGCAGGGACT AGATTGTATCCCCTCACCAAGAAGCGTGCCAAGCCTGCCGTGCCTCTGGGTGCCAACTAC AGGCTTATTGATATCCCTGTCAGCAACTGTTTGAACAGCAACATATCCAAGATCTATGTG CTGACACAATTCAACTCTGCCTCTCTGAACCGTCACCTGTCAAGAGCCTATGGGAACAAC ATTGGCGGGTACAAGAATGAAGGGTTCGTTGAAGTCCTCGCTGCACAGCAGAGCCCAGAT AATCCTAACTGGTTTCAGGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAG GAGCATAATGTTATGGAGTTTCTAATTCTGGCTGGAGATCACCTTTACCGCATGGACTAT GAAAAGTTCATTCAGGCACACAGAGAAACAGATTCTGATATTACTGTTGCTGCCCTGCCA ATGGATGAGAAACGTGCAACTGCATTCGGCCTCATGAAAATTGACGAGGAAGGGAGAATA GTTGAATTTGCAGAGAAACCAAAAGGAGAACAATTGAAAGCAATGATGGTTGACACTACC ATACTTGGCCTTGACGACGTGAGGGCAAAAGAAATGCCTTATATTGCTAGCATGGGTATC TATGTGATTAGTAAAAATGTAATGCTTCAGCTCCTCCGTGAACAATTTCCTGGAGCTAAT GACTTTGGAAGTGAAGTCATTCCAGGTGCAACAAACATCGGAATGAGGGTACAAGCTTAC TTGTATGATGGTTACTGGGAAGACATTGGTACCATTGAGGCATTCTATAATGCAAATCTG GGAATAACGAAAAAGCCTGTACCAGATTTCAGTTTCTATGACCGGTCTGCTCCAATTTAT ACACAACCTCGACACTTGCCTCCTTCGAAGGTTCTTGATGCTGATGTGACAGACAGTGTC ATTGGTGAAGGTTGTGTTATTAAAAACTGTAAGATACACCATTCAGTAGTTGGACTCCGG TCCTGCATTTCTGAAGGCGCAATAATAGAGGACTCATTACTCATGGGAGCTGACTACTAC GAGACTGAAGCAGACAAGAAACTCCTTGGTGAAAAAGGTGGCATTCCCATTGGTATTGGG AAGAATTGCCACATTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTG AAGATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACTTTATC AAAAGTGGCATTGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGA

Peptide Sequence

PEP ID	Os08t0345800-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:15666389:15672583:-1 gene:Os08g0345800 transcript:Os08t0345800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2 description:Similar to Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosphate adenyl transferase). (Os08t0345800-01);Similar to Glucose-1-phosphate adenylyltransferase. (Os08t0345800-02);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-03);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-04)
Sequence	MNVLASKIFPSRSNVASEQQQSKREKATIDDAKNSSKNKNLDRSVDESVLGIILGGGAGT RLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNN IGGYKNEGFVEVLAAQQSPDNPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDY EKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTT ILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAY LYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSV IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIG KNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI

Transcript Sequence

Transcript ID	Os08t0345800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:15666389:15672583:-1 gene:Os08g0345800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2 description:Similar to Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosphate adenyl transferase). (Os08t0345800-01);Similar to Glucose-1-phosphate adenylyltransferase. (Os08t0345800-02);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-03);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-04)
Sequence	GTGCATTTCTACAATCTTTTGTTGCCCATTCATCTGGGTTTTCTTCTGCTTCTTTTTTTT TCCTAGAGAGTACGGTTTTCTTTGTAATTCTTTAATTTGTTGCAACCATGAATGTATTGG CATCTAAGATCTTCCCTTCCCGCTCCAATGTTGCCAGCGAGCAACAACAATCGAAGCGCG AGAAAGCAACTATTGATGACGCTAAGAACTCGTCCAAGAACAAAAATCTTGACCGCAGTG TCGATGAGAGTGTGCTTGGAATCATTCTTGGAGGTGGTGCAGGGACTAGATTGTATCCCC TCACCAAGAAGCGTGCCAAGCCTGCCGTGCCTCTGGGTGCCAACTACAGGCTTATTGATA TCCCTGTCAGCAACTGTTTGAACAGCAACATATCCAAGATCTATGTGCTGACACAATTCA ACTCTGCCTCTCTGAACCGTCACCTGTCAAGAGCCTATGGGAACAACATTGGCGGGTACA AGAATGAAGGGTTCGTTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGT TTCAGGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATGTTA TGGAGTTTCTAATTCTGGCTGGAGATCACCTTTACCGCATGGACTATGAAAAGTTCATTC AGGCACACAGAGAAACAGATTCTGATATTACTGTTGCTGCCCTGCCAATGGATGAGAAAC GTGCAACTGCATTCGGCCTCATGAAAATTGACGAGGAAGGGAGAATAGTTGAATTTGCAG AGAAACCAAAAGGAGAACAATTGAAAGCAATGATGGTTGACACTACCATACTTGGCCTTG ACGACGTGAGGGCAAAAGAAATGCCTTATATTGCTAGCATGGGTATCTATGTGATTAGTA AAAATGTAATGCTTCAGCTCCTCCGTGAACAATTTCCTGGAGCTAATGACTTTGGAAGTG AAGTCATTCCAGGTGCAACAAACATCGGAATGAGGGTACAAGCTTACTTGTATGATGGTT ACTGGGAAGACATTGGTACCATTGAGGCATTCTATAATGCAAATCTGGGAATAACGAAAA AGCCTGTACCAGATTTCAGTTTCTATGACCGGTCTGCTCCAATTTATACACAACCTCGAC ACTTGCCTCCTTCGAAGGTTCTTGATGCTGATGTGACAGACAGTGTCATTGGTGAAGGTT GTGTTATTAAAAACTGTAAGATACACCATTCAGTAGTTGGACTCCGGTCCTGCATTTCTG AAGGCGCAATAATAGAGGACTCATTACTCATGGGAGCTGACTACTACGAGACTGAAGCAG ACAAGAAACTCCTTGGTGAAAAAGGTGGCATTCCCATTGGTATTGGGAAGAATTGCCACA TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGATAATCAATG TTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACTTTATCAAAAGTGGCATTG TTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAGTAGCTGCGTAA TATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATTATAAGAAGAATAAAAGCAGT TCAAGGCACTTTATTCCCTTTTTTTTTCTTCTGTTCTTCCTCTATTGTGTTAGGATAAAT GTAATGGTAGAAGCAACTGTTTTTCAGATGTTTTGGGAGTGAATGATACCGTGCTTGAAT TTTCC