Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0343300-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:15494288:15501842:1 gene:Os08g0343300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0343300-01)
Sequence

ATGGGCTCCATGGAGCCGTTCAACCGGCTGGTGAGGCTGGCGGCGCGCGCCTTCTACGAC
GACATCTCGATGAAGGGCGACAACCAGCCCAAGACCTCCCGCGGGGACAACCGGGGGATG
GCTGTCGTCGTCCTCGACGCGCTCACCAGACGCCAATGGGTTCGAGAGGAGGATTTGGCT
AAGGCATTGAAACTCCACTCAAAGCAATTGCGCCGTATCCTCCGATTCTTTGAAGAAGAG
AAACTAGTGACACGAGATCACCGGAAGGAGTCAGCAAAAGGAGCAAAAATATACAGTGCA
GCAGCTGCAGCTGCTGGTGATGGTCAATCAATTACCAAGGAGGGAGAAGAGAAAGTAAAG
ATGCATACCCACTCGTACTGTTGCTTGGACTATGCACAGATCTGTGATGTTGTAAGGTAT
CGGATACATCGCATGAAGAAAAAGTTGAAAGATGAATTGGACAGCAGAAATACAATCCAA
CACTATATATGCCCTAACTGTAAGAAAAGGTATTCAGCCTTCGATGCATTACAGCTTATA
AGCTACACCGATGAGTACTTCCATTGCGAAAATTGCAATGGTGAGCTAGTTGCAGAGAGT
GACAAGCTTGCTTCTGAGGAAATGGGAGATGGTGATGATAATGCAAGAAAACGCCGGCGT
GAGAAACTAAAGGATATGCAGCAAAGGATCGATGAACAATTGAAGCCATTGCAAGCACAA
CTTAATAGGGTGAAGGATCTTCCTGCTCCTGAGTTTGGGAGCTTACAATCATGGGAAAGA
GCTAACATTGGTGCTTTTGGAACTGCTGACCCTAGTGCTGCTGACTCGTCTAGGAACCCA
CAAGGGCAGTATGGTACACCAATGCCATACCTCGGAGAGACAAAGGTTGAAGTTGCATTG
TCTGGCACCGGTGTAAAAGATGAAGGTGCTGAATCAGGTACAAATGGTAACGGGCTGAAA
GTCTTGCCTCCATGGATGATCAAACAAGGTATGAATCTTACAAAAGAACAAAGAGGAGAG
ACCAGTAACTCATCAAATCTAGATGAAAAATCAGAAGTCAAGGATGAGAAAAAACAGGAC
TCAAAAGAAGATGAGAAGAGTATACAGGATGAATACATAAAGGCTTATTATGAGGCCTTA
AGGAAAAGACAGGACGAAGAAGAAGCGAAAAGGAAGATACAGCAGGAAGGGGATACATTT
GCTTCTGCGTCTCATTCTGAACGGCAGGTGGGCATGAAATCCAAACGAGAGGATGATGAT
GAGGGTGTTGAATGGGAAGAAGAGCAACCTGCAGGGAATACAGCTGAGACATACAAACTG
GCAGATTTGAATGTTGAAGCCCAAGAATCTGGTGATGAAGAAGATGAAATTGACTGGGAA
GAGGGTTAA

Peptide Sequence

PEP ID

Os08t0343300-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:15494288:15501842:1 gene:Os08g0343300 transcript:Os08t0343300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0343300-01)
Sequence

MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLA
KALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKIYSAAAAAAGDGQSITKEGEEKVK
MHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLI
SYTDEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQ
LNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQGQYGTPMPYLGETKVEVAL
SGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLDEKSEVKDEKKQD
SKEDEKSIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQVGMKSKREDDD
EGVEWEEEQPAGNTAETYKLADLNVEAQESGDEEDEIDWEEG

Transcript Sequence

Transcript ID

Os08t0343300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:15494288:15501842:1 gene:Os08g0343300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0343300-01)
Sequence

CTTCCCTTTCCTCCCCCCCCTCCGATCCAACCGCCGGCGGCGGCGGCGGCGACCGGCGGC
CAGAGCGAGCTCCGTCCCGATCCGGCGGGGAGGGGCCTCCCCGCCCCCACGCGCTAACCT
CCCCAGGCGGCCTCCTCCTCCTCCTCCTCCGCAGCGATGGGCTCCATGGAGCCGTTCAAC
CGGCTGGTGAGGCTGGCGGCGCGCGCCTTCTACGACGACATCTCGATGAAGGGCGACAAC
CAGCCCAAGACCTCCCGCGGGGACAACCGGGGGATGGCTGTCGTCGTCCTCGACGCGCTC
ACCAGACGCCAATGGGTTCGAGAGGAGGATTTGGCTAAGGCATTGAAACTCCACTCAAAG
CAATTGCGCCGTATCCTCCGATTCTTTGAAGAAGAGAAACTAGTGACACGAGATCACCGG
AAGGAGTCAGCAAAAGGAGCAAAAATATACAGTGCAGCAGCTGCAGCTGCTGGTGATGGT
CAATCAATTACCAAGGAGGGAGAAGAGAAAGTAAAGATGCATACCCACTCGTACTGTTGC
TTGGACTATGCACAGATCTGTGATGTTGTAAGGTATCGGATACATCGCATGAAGAAAAAG
TTGAAAGATGAATTGGACAGCAGAAATACAATCCAACACTATATATGCCCTAACTGTAAG
AAAAGGTATTCAGCCTTCGATGCATTACAGCTTATAAGCTACACCGATGAGTACTTCCAT
TGCGAAAATTGCAATGGTGAGCTAGTTGCAGAGAGTGACAAGCTTGCTTCTGAGGAAATG
GGAGATGGTGATGATAATGCAAGAAAACGCCGGCGTGAGAAACTAAAGGATATGCAGCAA
AGGATCGATGAACAATTGAAGCCATTGCAAGCACAACTTAATAGGGTGAAGGATCTTCCT
GCTCCTGAGTTTGGGAGCTTACAATCATGGGAAAGAGCTAACATTGGTGCTTTTGGAACT
GCTGACCCTAGTGCTGCTGACTCGTCTAGGAACCCACAAGGGCAGTATGGTACACCAATG
CCATACCTCGGAGAGACAAAGGTTGAAGTTGCATTGTCTGGCACCGGTGTAAAAGATGAA
GGTGCTGAATCAGGTACAAATGGTAACGGGCTGAAAGTCTTGCCTCCATGGATGATCAAA
CAAGGTATGAATCTTACAAAAGAACAAAGAGGAGAGACCAGTAACTCATCAAATCTAGAT
GAAAAATCAGAAGTCAAGGATGAGAAAAAACAGGACTCAAAAGAAGATGAGAAGAGTATA
CAGGATGAATACATAAAGGCTTATTATGAGGCCTTAAGGAAAAGACAGGACGAAGAAGAA
GCGAAAAGGAAGATACAGCAGGAAGGGGATACATTTGCTTCTGCGTCTCATTCTGAACGG
CAGGTGGGCATGAAATCCAAACGAGAGGATGATGATGAGGGTGTTGAATGGGAAGAAGAG
CAACCTGCAGGGAATACAGCTGAGACATACAAACTGGCAGATTTGAATGTTGAAGCCCAA
GAATCTGGTGATGAAGAAGATGAAATTGACTGGGAAGAGGGTTAAAAGGCAGTCACAAAT
TCGTTAAAGTAGTTCAATTTCATTCCAGGAATTGGATGATGAGCAATATCACCAACTGAA
CAAGAAGCCAAGAAAAAGGCATGAAAAGCATTGCCACCAAAGAATTAGTTTGTATGGTTT
GTTTGACCAAGGGAACTTTTCGGAAGTGAAGCGTTTTCCTTTTAATAGCGAAAACATTTC
CCAACCCCAGGCGGCATTTTCTCCCCAAGATCCTTAAAAAGCTACCATACTGTAAAGTAT
TATGCTATTGACATCTTCAAGGGCCATGTGGGTGGAATTTATTGTCGCAAAATCAGCTCT
GTTTTCAGTGAATGATCTTTTTTTTTTTTATGTTGTGAGACTGTACGCTATGGCCATAAA
CATGCCATTTTTCAGATGTTCTTGCCATGACCTGTATATTATGATGGCTATGCGCTAGAT
TAAATTTCTGAGATTAATGAATTGATTTACTCCAAGATTAATAATATCAATGGTAGTTTG
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