Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0340900-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:15354219:15356884:1 gene:Os08g0340900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0340900-01)
Sequence

ATGCCACTCTTGAATCCTCTAAGCCGCGCGCCTTCCACCCACATCCGCAGCTTAGCTCGT
GTCCTACTCTCATGCCTCCCCACCGGCGGCGACCGCCTCCGGCGTTTGAACCCGGCCATC
CATGCCCGTGCCACCGTCGCAGGAAGACTCGACGACCTCTTCCTCACCAACCTGCTCCTG
CGTGGCTACTCCAATCTTGGCCGCCTCCGTGACGCCCGCCACCTGTTCGATCGAATGCCC
CACCGGAACCTTGTCTCCTGGGGCTCGGTCATCTCCATGTACACACAGCACGGCCGCGAC
GATTGTGCAATTTCCCTCTTCGTGGCCTTCCAGAAGGCCTCTTGTGAGGTGCCCAATGAG
TTCTTGCTTGCCAGTGTCCTACGTGCGTGTACACAATCTAAGGCTGTTTCGCTTGGCGAG
CAAGTGCATGGGATTGCCGTCAAGTTGGACCTGGATGCTAATGTTTATGTTGGGACTGCG
CTTATCAACTTATATGCAAAGCTTGGCTGCATGGATGAGGCAATGTTGGTGTTTCATGCA
CTCCCTGTAAGAACCCCAGTTACTTGGAACACAGTTATCACAGGATACGCTCAGATTGGG
TGTGGGGGAGTAGCCCTAGAGTTGTTTGACAGGATGGGGATTGAGGGTGTCCGTCCTGAT
AGGTTTGTACTAGCAAGTGCTGTCAGTGCTTGCTCTGCACTTGGCTTTCTAGAGGGTGGT
AGGCAAATACATGGTTACGCGTATCGTAGTGCCACAGAGACAGATACATCAGTGATCAAT
GTGTTGATTGATCTATATTGCAAGTGCTCCAGACTGTCAGCAGCTCGGAAACTGTTTGAT
TGCATGGAGTACCGTAATCTTGTGTCTTGGACAACCATGATTTCTGGTTATATGCAGAAC
TCATTCAATGCTGAAGCGATAACCATGTTCTGGAATATGACTCAGGCTGGCTGGCAGCCA
GATGGTTTTGCTTGTACAAGTATCTTGAACTCATGTGGCTCTTTGGCAGCAATATGGCAA
GGAAGGCAGATACATGCGCATGTCATAAAGGCTGATCTGGAGGCTGATGAGTATGTCAAG
AATGCTCTCATCGACATGTATGCTAAATGTGAGCATCTAACTGAAGCAAGAGCAGTATTT
GATGCCTTGGCTGAAGATGATGCAATTTCATACAATGCTATGATTGAAGGATACTCAAAA
AATCGTGATCTTGCAGAAGCAGTGAACATATTCCAAAGAATGAGATTTTTCTCACTAAGA
CCAAGTCTATTGACCTTTGTTTCACTCCTTGGGGTGTCATCATCTCAGTTAGCCATTGAA
TTGAGCAAGCAGATTCATGGCCTTATTATAAAATCAGGAACTTCATTGGACCTTTATGCT
GCGAGTGCTCTAATTGATGTGTACTCAAAGTGTTCCCTTGTGAATGATGCCAAGACTGTA
TTCAATATGTTGCACTACAAGGACATGGTCATCTGGAATTCAATGATTTTTGGCCATGCA
CAGAATGAGCAAGGGGAAGAGGCCATAAAACTCTTCAACCAGCTTCTTTTATCGGGTATG
GCACCTAATGAGTTCACGTTTGTCGCACTAGTAACTGTGGCAAGTACACTAGCAAGCATG
TTCCACGGCCAGCAGTTTCATGCTTGGATCATCAAAGCAGGTGTTGACAATGATCCGCAT
GTTTCAAATGCTCTTATTGACATGTATGCTAAGTGTGGCTTCATTAAGGAAGGGAGGATG
CTGTTTGAATCAACATGTGGGGAGGATGTCATTTGTTGGAACTCAATGATTACGACTTAT
GCACAGCACGGTCATGCTGAAGAAGCTCTTCAGGTTTTCCGGCTGATGGGAGAAGCTGAG
GTAGAACCTAACTATGTGACCTTTGTCGGTGTGTTATCAGCATGTGCGCATGCAGGTTTT
GTGGGTGAAGGATTAAACCATTTTAACTCTATGAAATCAAATTATGATATTGAACCAGGC
ATTGAGCATTACGCTTCTGTAGTCAATCTTTTTGGTCGTTCTGGGAAACTGCATGCTGCC
AAGGAGTTTATTGAAAGGATGCCAATCAAACCAGCTGCAGCTGTTTGGAGAAGTTTGCTG
AGCGCTTGCCATCTTTTTGGCAACGCTGAAATTGGGAGGTATGCCGCTGAAATGGCACTC
TTGGCAGATCCAACAGACAGTGGCCCTTATGTTTTACTGTCAAATATTTATGCCTCTAAA
GGACTCTGGGCTGATGTGCACAACTTAAGACAGCAGATGGATAGTTCTGGCACAGTGAAG
GAAACAGGATGTAGCTGGATTGAAGTGACAAAGGAAGTTCACACGTTCATTGTGAGAGGG
AGAGAACACCCAGAGGCAGAACTGATATATTCAGTACTGGATGAGCTGACGAGTCTAATT
AAAAATTTGGGTTATGTTCCTGATACTTCTGACCATACTCTGTTGTGTGAGACTGGTTAA

Peptide Sequence

PEP ID

Os08t0340900-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:15354219:15356884:1 gene:Os08g0340900 transcript:Os08t0340900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0340900-01)
Sequence

MPLLNPLSRAPSTHIRSLARVLLSCLPTGGDRLRRLNPAIHARATVAGRLDDLFLTNLLL
RGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNE
FLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHA
LPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGG
RQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQN
SFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVK
NALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLR
PSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTV
FNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASM
FHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTY
AQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPG
IEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMAL
LADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRG
REHPEAELIYSVLDELTSLIKNLGYVPDTSDHTLLCETG

Transcript Sequence

Transcript ID

Os08t0340900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:15354219:15356884:1 gene:Os08g0340900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0340900-01)
Sequence

CTGGCCTCCTCGCCTCGCCACTTCGCCCGCCGCCTGCGCCTGCGCCGCCGGCGACCTCCA
TCCCGTCCCCGCGCGAGCAGGGTCCCCGGCGACCTGCTGCTTCCTCCGCCGGTGAGCTCC
GGTACCTAGGCACACAATCCTCTCCAGTGTAACAGGAGATGGTGGAGCATGCCACTCTTG
AATCCTCTAAGCCGCGCGCCTTCCACCCACATCCGCAGCTTAGCTCGTGTCCTACTCTCA
TGCCTCCCCACCGGCGGCGACCGCCTCCGGCGTTTGAACCCGGCCATCCATGCCCGTGCC
ACCGTCGCAGGAAGACTCGACGACCTCTTCCTCACCAACCTGCTCCTGCGTGGCTACTCC
AATCTTGGCCGCCTCCGTGACGCCCGCCACCTGTTCGATCGAATGCCCCACCGGAACCTT
GTCTCCTGGGGCTCGGTCATCTCCATGTACACACAGCACGGCCGCGACGATTGTGCAATT
TCCCTCTTCGTGGCCTTCCAGAAGGCCTCTTGTGAGGTGCCCAATGAGTTCTTGCTTGCC
AGTGTCCTACGTGCGTGTACACAATCTAAGGCTGTTTCGCTTGGCGAGCAAGTGCATGGG
ATTGCCGTCAAGTTGGACCTGGATGCTAATGTTTATGTTGGGACTGCGCTTATCAACTTA
TATGCAAAGCTTGGCTGCATGGATGAGGCAATGTTGGTGTTTCATGCACTCCCTGTAAGA
ACCCCAGTTACTTGGAACACAGTTATCACAGGATACGCTCAGATTGGGTGTGGGGGAGTA
GCCCTAGAGTTGTTTGACAGGATGGGGATTGAGGGTGTCCGTCCTGATAGGTTTGTACTA
GCAAGTGCTGTCAGTGCTTGCTCTGCACTTGGCTTTCTAGAGGGTGGTAGGCAAATACAT
GGTTACGCGTATCGTAGTGCCACAGAGACAGATACATCAGTGATCAATGTGTTGATTGAT
CTATATTGCAAGTGCTCCAGACTGTCAGCAGCTCGGAAACTGTTTGATTGCATGGAGTAC
CGTAATCTTGTGTCTTGGACAACCATGATTTCTGGTTATATGCAGAACTCATTCAATGCT
GAAGCGATAACCATGTTCTGGAATATGACTCAGGCTGGCTGGCAGCCAGATGGTTTTGCT
TGTACAAGTATCTTGAACTCATGTGGCTCTTTGGCAGCAATATGGCAAGGAAGGCAGATA
CATGCGCATGTCATAAAGGCTGATCTGGAGGCTGATGAGTATGTCAAGAATGCTCTCATC
GACATGTATGCTAAATGTGAGCATCTAACTGAAGCAAGAGCAGTATTTGATGCCTTGGCT
GAAGATGATGCAATTTCATACAATGCTATGATTGAAGGATACTCAAAAAATCGTGATCTT
GCAGAAGCAGTGAACATATTCCAAAGAATGAGATTTTTCTCACTAAGACCAAGTCTATTG
ACCTTTGTTTCACTCCTTGGGGTGTCATCATCTCAGTTAGCCATTGAATTGAGCAAGCAG
ATTCATGGCCTTATTATAAAATCAGGAACTTCATTGGACCTTTATGCTGCGAGTGCTCTA
ATTGATGTGTACTCAAAGTGTTCCCTTGTGAATGATGCCAAGACTGTATTCAATATGTTG
CACTACAAGGACATGGTCATCTGGAATTCAATGATTTTTGGCCATGCACAGAATGAGCAA
GGGGAAGAGGCCATAAAACTCTTCAACCAGCTTCTTTTATCGGGTATGGCACCTAATGAG
TTCACGTTTGTCGCACTAGTAACTGTGGCAAGTACACTAGCAAGCATGTTCCACGGCCAG
CAGTTTCATGCTTGGATCATCAAAGCAGGTGTTGACAATGATCCGCATGTTTCAAATGCT
CTTATTGACATGTATGCTAAGTGTGGCTTCATTAAGGAAGGGAGGATGCTGTTTGAATCA
ACATGTGGGGAGGATGTCATTTGTTGGAACTCAATGATTACGACTTATGCACAGCACGGT
CATGCTGAAGAAGCTCTTCAGGTTTTCCGGCTGATGGGAGAAGCTGAGGTAGAACCTAAC
TATGTGACCTTTGTCGGTGTGTTATCAGCATGTGCGCATGCAGGTTTTGTGGGTGAAGGA
TTAAACCATTTTAACTCTATGAAATCAAATTATGATATTGAACCAGGCATTGAGCATTAC
GCTTCTGTAGTCAATCTTTTTGGTCGTTCTGGGAAACTGCATGCTGCCAAGGAGTTTATT
GAAAGGATGCCAATCAAACCAGCTGCAGCTGTTTGGAGAAGTTTGCTGAGCGCTTGCCAT
CTTTTTGGCAACGCTGAAATTGGGAGGTATGCCGCTGAAATGGCACTCTTGGCAGATCCA
ACAGACAGTGGCCCTTATGTTTTACTGTCAAATATTTATGCCTCTAAAGGACTCTGGGCT
GATGTGCACAACTTAAGACAGCAGATGGATAGTTCTGGCACAGTGAAGGAAACAGGATGT
AGCTGGATTGAAGTGACAAAGGAAGTTCACACGTTCATTGTGAGAGGGAGAGAACACCCA
GAGGCAGAACTGATATATTCAGTACTGGATGAGCTGACGAGTCTAATTAAAAATTTGGGT
TATGTTCCTGATACTTCTGACCATACTCTGTTGTGTGAGACTGGTTAATCTAGTAATCTA
CTTGTTAAGGCTTCTACACAGATTTC