Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0313600-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:13392644:13398752:-1 gene:Os08g0313600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cen8.t00960 description:Ubiquitin system component Cue domain containing protein. (Os08t0313600-00)
Sequence

ATGTCCGCTGTAGTGTGCGGCAAGCGGGCTTCCTCTTCCTTCTTCGAGGATCTCACCCAC
CCGACCGGCGGCTCCCCTCCCGCTGCCAAGCGTACCCGCTGCGGGGGCGCCTTTTTCCCG
CCGCCGCCGCCGCCCACCTGGCCACGCGGCGTCACCAAGAACGACCTTGTCGCCCGACTC
TCTACGCAATTCCCTGCCATGAGCCTCGAGATGATTGAAAAGGCTCTGGACAAATCTGGA
AATAATGTGGATTCAGCAATAAGGAGTTTGCTTAATCTACATTTGGAATCTGTGCAAAAT
AACAGTGGCGTTGCATTTGAACCCATACAAGAAACCACTGAGGTTCAGGTGTCTGCTGAA
GATGGTAACGAGATTGGTGCACCTTCAGAAAGTGCCCCTTGTCCTGAGAACTTTCCGTCA
AATGGCTCAGAATGGGTCGAGCTACTTGTGAATGAGATGACAACTGCTTCTAACATGGAT
GATGCAAAGTCTCGTGCCACCAGAGTGCTGGAGGCTTTTGAGAAGGCTGTGGTGTCTCAT
GTCAATGCTCAAGGACCTCATGATTTTCAAAAGGAAAATGCAGTGCTTAAGGGGCAAATG
GAATCGCTTACAAGAGAAAACACCATTCTGAAGAGAGCATTTGCGATACAGCATGAGCGG
CAGGACTATGATGCGAAGAATCAAGAACTACAGGATGAGAAACAGCGCATTGCTGAGTTC
CAAGAACAAGTTAGAAACCTTGAGCTTAATAACTACAGATTGAGCATGCTCCTTAGGCAA
GCTCAGCAGGGCAGCTCAATTCCAGGGCGCTTTAATCCGGATGTTTTCTAA

Peptide Sequence

PEP ID

Os08t0313600-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:13392644:13398752:-1 gene:Os08g0313600 transcript:Os08t0313600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cen8.t00960 description:Ubiquitin system component Cue domain containing protein. (Os08t0313600-00)
Sequence

MSAVVCGKRASSSFFEDLTHPTGGSPPAAKRTRCGGAFFPPPPPPTWPRGVTKNDLVARL
STQFPAMSLEMIEKALDKSGNNVDSAIRSLLNLHLESVQNNSGVAFEPIQETTEVQVSAE
DGNEIGAPSESAPCPENFPSNGSEWVELLVNEMTTASNMDDAKSRATRVLEAFEKAVVSH
VNAQGPHDFQKENAVLKGQMESLTRENTILKRAFAIQHERQDYDAKNQELQDEKQRIAEF
QEQVRNLELNNYRLSMLLRQAQQGSSIPGRFNPDVF

Transcript Sequence

Transcript ID

Os08t0313600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:13392644:13398752:-1 gene:Os08g0313600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cen8.t00960 description:Ubiquitin system component Cue domain containing protein. (Os08t0313600-00)
Sequence

CTTCCGCCGCCGATCCCGAGAGAAGGCCCCGACCAGAGCGCCTCCCCCGCGCCCCAAGGC
CGAAACCCTAGCCGCGCCACCTCCCAGGTCCCCACGATCGCCCCGGAAGGCGGTGGTGGC
GACGGTGGGTGGGGGAGGAGGACGGAAGGCACACAGGCCGGTGGTGCCACGGCGACCACC
ATGTCCGCTGTAGTGTGCGGCAAGCGGGCTTCCTCTTCCTTCTTCGAGGATCTCACCCAC
CCGACCGGCGGCTCCCCTCCCGCTGCCAAGCGTACCCGCTGCGGGGGCGCCTTTTTCCCG
CCGCCGCCGCCGCCCACCTGGCCACGCGGCGTCACCAAGAACGACCTTGTCGCCCGACTC
TCTACGCAATTCCCTGCCATGAGCCTCGAGATGATTGAAAAGGCTCTGGACAAATCTGGA
AATAATGTGGATTCAGCAATAAGGAGTTTGCTTAATCTACATTTGGAATCTGTGCAAAAT
AACAGTGGCGTTGCATTTGAACCCATACAAGAAACCACTGAGGTTCAGGTGTCTGCTGAA
GATGGTAACGAGATTGGTGCACCTTCAGAAAGTGCCCCTTGTCCTGAGAACTTTCCGTCA
AATGGCTCAGAATGGGTCGAGCTACTTGTGAATGAGATGACAACTGCTTCTAACATGGAT
GATGCAAAGTCTCGTGCCACCAGAGTGCTGGAGGCTTTTGAGAAGGCTGTGGTGTCTCAT
GTCAATGCTCAAGGACCTCATGATTTTCAAAAGGAAAATGCAGTGCTTAAGGGGCAAATG
GAATCGCTTACAAGAGAAAACACCATTCTGAAGAGAGCATTTGCGATACAGCATGAGCGG
CAGGACTATGATGCGAAGAATCAAGAACTACAGGATGAGAAACAGCGCATTGCTGAGTTC
CAAGAACAAGTTAGAAACCTTGAGCTTAATAACTACAGATTGAGCATGCTCCTTAGGCAA
GCTCAGCAGGGCAGCTCAATTCCAGGGCGCTTTAATCCGGATGTTTTCTAAGAGGAAGTG
CAAATTCCACCTTTCCTTTGCATACGAGTTCGGAGGCTTAAGATGTTACTATAGCATGCA
AATCTTAAGCTTAAATTTTTGTTGTGGACGTGTAAGTTTATGTTCCGCTGTAGTATGGGC
AGCGGAATATTATGTTTTATAAATGATGGGCAATTCATGGTCAATAGATAAATTCTAG