Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0300700-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:12381583:12390393:1 gene:Os08g0300700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0300700-01)
Sequence	ATGCCCCCGCCGACCCCGCTGGCCCGCCTCCTCGCGGCCATCTCCGCCGCCGCCTCCTCG CCCGCCGACCTCCGCCGCCTCTCCCACCGCGTCCTGTCCCCCTCCGCGCCTCTTCCCCCT CTCCGCTGCCTCAACACCCTCCTCATGGCCCTCGCACGCCACCGTATGTTCCCGGACATG GAGTCCCTCGCCTCCCGCATGCCCGCCCGCAACCTCCGCACGTACACCACCCTCATCAAC GCCTACTGCCTCGCCGGCGACATCCCCGCCGCGAAGCAGCATCTCACCTCCCTCCTCCAC GCGGGACTCGCGCCGGACTCGTACGCGTACACCTCTTTCGTCCTTGGATATTGCCGCGCA GGGATGCTGACGCACGCCTGCCGGGTGTTCGTGCTAATGCCGCTCCGGGGATGCCTGCGG ACAGCGTTCACGTACACGGCGCTGCTCCATGGGCTGCTTGGCGCAGGGATGGTTCGTGAG GCTATGGCAGTGTTCGTTGGGATGAGGGCGGACAGCTGTGCTCCGGATACCCATGTGTAC GCGACGATGGTGCACGGGCTGTGTGAGGCTGGACGAACTGAGGAGGCTGAGGTGCTGCTT GAAGAGGCAATGTCTAACGGATTTGAGCCAAATATTGTTGTCTACAATGCGCTGATTGAT GGCTACTGCAATGCTGGAGAAATGGAACATGCACTTAAGGTCTTCGAGGGCATGGATGGC AACCGGTGCTCCCCAAATGTGCGAACATACACCGAGCTGATACATGGGTTGTGCAAATCA GGGAAGGTGGAAAGGGCCATGGTGCTGTTCAGTCGGATGGTTGAGGCAGGTTTGGAGCCC AATGTAGTGACATACACAGCTTTAATTCAGGGGCAGTGCAATGAGGGTCACCTGCAATGT GCTTTTAGGCTTCTTCATTTGATGGAGACTAATGGGCTGGTTCCAAACGACTGGACTTTC TCGGTGTTAATTGATGCTCTCTGCAAGCGTGAGAAGGTTGAGGAGGCCCAGTTGTTTCTT GGGTCTCTTGTCAAGAAGGGAGTTAAGGTGAATGAGGTTGTTTACACTAGCTTGATAGAT GGATTGTGCAAGACAGGAAAGATTGATGCTGCTGATGAATTGATGCAGAAAATGATCTCA GAGGGGTTTGTGCCAGATGCCCACTCATACAGTTCACTTATTGATGGATTATGCAGGCAA AAGAAGTTGTCGCAAGCAACATTGATGTTGGAAGATATGATGGAGAAGGGAATACAGGCA AGTCCTGTAACATATACCATTATAATTGATGAATTAGTCAGGGAGGTAGGATCAGAAGGT CCAAAGAAAATATTCGACAAGATGATCGCGACAGGTATCAATCCTGATATTGTAACGTAC ACAGTATTTGTCCGCTCCTACTGTGAAGAGGGGAGAATGGAAGATGCTGAATCCATGATA GTTCAAATGGTTGATCGTGGTGTTTTCCCTAACCTAGTCACGTATAACACTTTGATTAGA GGGTATGCAAATCTAGGACTAGTCAGTCAAGCATTTTCAACTTTTGAAGTAATGGTTGGT AAGGGGTGGAAACCAAACGAGGACTCCTACACAGTTCTTCTCAGACTTGTGGTAAAGAAA AGTTCCTCTGATAACTCTGTTGATATATGGAAAATAGCAGACATGAAAGATCTCCAGGTA CTTTTGGAGGACATCACTGAGCGTCAGTTGCCACTAGCCGCCGATATTTACAGTTGTTTC ATTAGATGTTTATGCCGAGTTGACAGATTGGAGGAAGCAAAACATTTTTTTATGGGGATG CAGAATGCTAACTTGACCCCTAGCGAGGATGTATATACTTCGATAATAGACTGCTGTTGC AGATTAAAAATACTAACAGATGCTTTGACATTGCTTGATTCAATGACGAAAAGTGGTTAT TTGCCACATTTAGAATCTTATAGAATTATAATTTCTTCTCTTTGTGAGGGAGGAAACTTT CGCACTGCTAAGGAAGTTTTTGGTGATTTGTTACTGAAGGAATCCAATTATGATGAGATT GTATGGAAAATTCTGATTTATGGCCTATTACAGAAGGGCAGTGTTGCTGAGTTCTCAAGT CTGCTCTCCGTCATGAAGGAACATGGTTACCAACCTAGTAACACAATTAATGCCATGATT ACAGGTGAAATAACAGTTACAAATGAAGTTCAGGAAATCGCTAGATAA

Peptide Sequence

PEP ID	Os08t0300700-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:12381583:12390393:1 gene:Os08g0300700 transcript:Os08t0300700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0300700-01)
Sequence	MPPPTPLARLLAAISAAASSPADLRRLSHRVLSPSAPLPPLRCLNTLLMALARHRMFPDM ESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRA GMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVY ATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDG NRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQC AFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLID GLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQA SPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMI VQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKK SSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGM QNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNF RTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMI TGEITVTNEVQEIAR

Transcript Sequence

Transcript ID	Os08t0300700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:12381583:12390393:1 gene:Os08g0300700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0300700-01)
Sequence	GGATCCCCCTCTCCCATCTCCCATCTCACCACCTCGGCCGCCGCCGCCGCCGCCGCCGCC GCCATCGCCGCAGCGATCTGTCACAATCACCACCGCCACCGGCAATGCCCACCGCGTCAT AGGTCGAGGCGCGCCATGCCCCCGCCGACCCCGCTGGCCCGCCTCCTCGCGGCCATCTCC GCCGCCGCCTCCTCGCCCGCCGACCTCCGCCGCCTCTCCCACCGCGTCCTGTCCCCCTCC GCGCCTCTTCCCCCTCTCCGCTGCCTCAACACCCTCCTCATGGCCCTCGCACGCCACCGT ATGTTCCCGGACATGGAGTCCCTCGCCTCCCGCATGCCCGCCCGCAACCTCCGCACGTAC ACCACCCTCATCAACGCCTACTGCCTCGCCGGCGACATCCCCGCCGCGAAGCAGCATCTC ACCTCCCTCCTCCACGCGGGACTCGCGCCGGACTCGTACGCGTACACCTCTTTCGTCCTT GGATATTGCCGCGCAGGGATGCTGACGCACGCCTGCCGGGTGTTCGTGCTAATGCCGCTC CGGGGATGCCTGCGGACAGCGTTCACGTACACGGCGCTGCTCCATGGGCTGCTTGGCGCA GGGATGGTTCGTGAGGCTATGGCAGTGTTCGTTGGGATGAGGGCGGACAGCTGTGCTCCG GATACCCATGTGTACGCGACGATGGTGCACGGGCTGTGTGAGGCTGGACGAACTGAGGAG GCTGAGGTGCTGCTTGAAGAGGCAATGTCTAACGGATTTGAGCCAAATATTGTTGTCTAC AATGCGCTGATTGATGGCTACTGCAATGCTGGAGAAATGGAACATGCACTTAAGGTCTTC GAGGGCATGGATGGCAACCGGTGCTCCCCAAATGTGCGAACATACACCGAGCTGATACAT GGGTTGTGCAAATCAGGGAAGGTGGAAAGGGCCATGGTGCTGTTCAGTCGGATGGTTGAG GCAGGTTTGGAGCCCAATGTAGTGACATACACAGCTTTAATTCAGGGGCAGTGCAATGAG GGTCACCTGCAATGTGCTTTTAGGCTTCTTCATTTGATGGAGACTAATGGGCTGGTTCCA AACGACTGGACTTTCTCGGTGTTAATTGATGCTCTCTGCAAGCGTGAGAAGGTTGAGGAG GCCCAGTTGTTTCTTGGGTCTCTTGTCAAGAAGGGAGTTAAGGTGAATGAGGTTGTTTAC ACTAGCTTGATAGATGGATTGTGCAAGACAGGAAAGATTGATGCTGCTGATGAATTGATG CAGAAAATGATCTCAGAGGGGTTTGTGCCAGATGCCCACTCATACAGTTCACTTATTGAT GGATTATGCAGGCAAAAGAAGTTGTCGCAAGCAACATTGATGTTGGAAGATATGATGGAG AAGGGAATACAGGCAAGTCCTGTAACATATACCATTATAATTGATGAATTAGTCAGGGAG GTAGGATCAGAAGGTCCAAAGAAAATATTCGACAAGATGATCGCGACAGGTATCAATCCT GATATTGTAACGTACACAGTATTTGTCCGCTCCTACTGTGAAGAGGGGAGAATGGAAGAT GCTGAATCCATGATAGTTCAAATGGTTGATCGTGGTGTTTTCCCTAACCTAGTCACGTAT AACACTTTGATTAGAGGGTATGCAAATCTAGGACTAGTCAGTCAAGCATTTTCAACTTTT GAAGTAATGGTTGGTAAGGGGTGGAAACCAAACGAGGACTCCTACACAGTTCTTCTCAGA CTTGTGGTAAAGAAAAGTTCCTCTGATAACTCTGTTGATATATGGAAAATAGCAGACATG AAAGATCTCCAGGTACTTTTGGAGGACATCACTGAGCGTCAGTTGCCACTAGCCGCCGAT ATTTACAGTTGTTTCATTAGATGTTTATGCCGAGTTGACAGATTGGAGGAAGCAAAACAT TTTTTTATGGGGATGCAGAATGCTAACTTGACCCCTAGCGAGGATGTATATACTTCGATA ATAGACTGCTGTTGCAGATTAAAAATACTAACAGATGCTTTGACATTGCTTGATTCAATG ACGAAAAGTGGTTATTTGCCACATTTAGAATCTTATAGAATTATAATTTCTTCTCTTTGT GAGGGAGGAAACTTTCGCACTGCTAAGGAAGTTTTTGGTGATTTGTTACTGAAGGAATCC AATTATGATGAGATTGTATGGAAAATTCTGATTTATGGCCTATTACAGAAGGGCAGTGTT GCTGAGTTCTCAAGTCTGCTCTCCGTCATGAAGGAACATGGTTACCAACCTAGTAACACA ATTAATGCCATGATTACAGGTGAAATAACAGTTACAAATGAAGTTCAGGAAATCGCTAGA TAAATTTGGAGAAACTAACCAACTGTTGTGTTGATGGTCTACAGCAGAAGGTGTGCAACT CAACATTGTTGCCTTTCTGTGCACAGTGAAGCAACAGATCCTCATGGACTACTTCCATTT GTGGCATCAGCATCGGGCTCAGTCGAGCCAGGCGCAGTACCGTCATTCGAGCTTGAGAAC ACGTGGACATGCGAGTGGTCAAGCTCATGGGCATGCTGACGGCCATCAAGCTCGAGCCTC GAGGACGGTGTCCGGCTAGCATTCGAGCTTGAGAAAGGAGAGGGGGCTGGAGGAGGAAGA AGGAGGAAAAGTTGGTTATGTGTCAATCCACTGAAGCAAGCGGGCTATTTGAGAAGATAG GGTAGCTATACTTTCAGTGGCTCCAGAAACTGCTAGACTTGGATATGTGAAATTAACATC CATTACGAATGATCTGATCCCGGAGCTAGCATTCTAGTTAAATTGCTGTGACTGGCCAAA TAACGATCGGTACATACTCAATTCTATTGAGAACTCAACTTCATCAAAATTTGGTGGAAG AGCTAGAGCAATTTTCAGTCAGTTTGCACACGCCAAGGTAGCTGTGATCACAGGGACTAA GAAGGATCAATTTCCAGGTCAAAAGAGATATCCATATACATTATATATCCAGAAGTTGAA GTGTAATTGCTTGTGAAAATGGTTCGCAGGAGACTGGAACATGATGAAATTACTAGATTC TACTTTTGTTATGGTGAAGAACATATACATAGAATGATGGCTGAGTATGTTCTGAGAAGG TCACTCCAAAAATAACTGGATCAGATAGATGAGGTGATCGACTCCTTAAAAATGCTACAG ATGTTTTTCATGGTCCATGCACTGACTAAGCTTCGTTTATTTTCAAGAGTTTCAAGATAT GTCATGAAAGGCAGCATGATGGAATATTGGCCCCCATTTTGCAGAACTTGGGCGAGGTTC TTGGAAAGTTCTGAACCTTTGCCTATATGAACTCTGGGGAAGTTAGTATTAAGCTCTATA TAGTAAATGATATTCACAGCATTCAACTTGTGTTAATAGTTTGCAGGCGTGGAATATTCT TTTTGACCGGAACATGGACTAATTATTTGACAATTGTATATAGAGATTCAATCAATACAT TCTTGAC