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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0292600-03
CDS Infomation

cds chromosome:IRGSP-1.0:8:11728314:11733106:1 gene:Os08g0292600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 28 description:Similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein. (Os08t0292600-01);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os08t0292600-02);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os08t0292600-03)
Sequence

ATGGTGTTGCCTTCATCAAATACCAGGGCCACTTCTTCCATGGCTTACCCTGTTTCCCTG
AGCAGCCTCCACCACCACCCCAACAACCACCATGCTTTTTTTCTTCCCTCGAAAACAAAC
CATGATAATACTCATAAACCTATTGAATCCTCTAGAATTTCTAGACGGTCTCTCATCTTC
CTCCCTGTCCTCCCTTCTCTTCTATACGCTTCATCATCCCCTGCCTTAGATGACGCAAAC
ATTCCATCCACCTCTGCCATTGATACCACCATCACAGATCGGATCTTCATGGACTTCAGT
GTCTGCCCTAGCTACTTTCGCTCTGACCGCACTTTAGGAGCTGAGCTTGCTACATGTCCT
GATTCTGAACCTCTTGGTCGTGTAATTTTTGGTTTGTATGGTCGACTCCTCCCCCTCACT
ACTGCCAACTTCAAAGCTGCTTGCACTTCTGCTGCATACCGGGGAACACTTGTCCACAAG
CTCCTTCAGGGCCAGTTCTTCGTTGCTGGCCGCCAAGGTCCTCGGCGTGACAGGGGCGAG
GTCCAACCTCCCACCGGACTTGTGAGGAATGCTGAGACTATTGACCCTAAAGCATTTGAA
CTAAAGCATGCAAGGCCTGGCACCCTCTCATTGTGCCTTGGACAGAACGATGACGATGAT
GACATCAAGCTCAATCCTAATTATCACAATGTTGAATTCTTGGTTACCACTGGACCAGGG
CCCTGCCCAGAGCTTGATGGACAGAACATTGTCTTTGGAACTGTATTGGAAGGAATGAAT
GTTATAACCAGCATTGCAACTATTCCTACCTATAAACCAGCTGAAAGGATCCGCTTCTTC
AATGATTTTGCCCAGTTGATTGGTGATGAAAGAGCTCAAACTGCTCGAGCGTTGTGGGAT
CGCCCGCTAAAAACTGTTTATATCAGTGATTGCGGAGAGCTAAAAGTGACCAAACCATCA
CTTTCCCCTCCAAGTCTGCCATAA

Peptide Sequence

PEP ID

Os08t0292600-03
PEP Infomation

pep chromosome:IRGSP-1.0:8:11728314:11733106:1 gene:Os08g0292600 transcript:Os08t0292600-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 28 description:Similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein. (Os08t0292600-01);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os08t0292600-02);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os08t0292600-03)
Sequence

MVLPSSNTRATSSMAYPVSLSSLHHHPNNHHAFFLPSKTNHDNTHKPIESSRISRRSLIF
LPVLPSLLYASSSPALDDANIPSTSAIDTTITDRIFMDFSVCPSYFRSDRTLGAELATCP
DSEPLGRVIFGLYGRLLPLTTANFKAACTSAAYRGTLVHKLLQGQFFVAGRQGPRRDRGE
VQPPTGLVRNAETIDPKAFELKHARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVTTGPG
PCPELDGQNIVFGTVLEGMNVITSIATIPTYKPAERIRFFNDFAQLIGDERAQTARALWD
RPLKTVYISDCGELKVTKPSLSPPSLP

Transcript Sequence

Transcript ID

Os08t0292600-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:11728314:11733106:1 gene:Os08g0292600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 28 description:Similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein. (Os08t0292600-01);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os08t0292600-02);Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain containing protein. (Os08t0292600-03)
Sequence

GTTCTCCTCCGCTCCTTGCGCCGCCGCCAAGACGAGCGGAGGGCCGGGCGGCGATCTCCA
TCTGGCAAGCAGAGCAGCGGAGGGGAGGAGGGGATCCTGGGAAGGATATTAGTGATTTTC
TACTGCTGTTTCGTCAGAAGGACAAGAACTGAAGAATTCAGTTAGCAACAGTATGGTGTT
GCCTTCATCAAATACCAGGGCCACTTCTTCCATGGCTTACCCTGTTTCCCTGAGCAGCCT
CCACCACCACCCCAACAACCACCATGCTTTTTTTCTTCCCTCGAAAACAAACCATGATAA
TACTCATAAACCTATTGAATCCTCTAGAATTTCTAGACGGTCTCTCATCTTCCTCCCTGT
CCTCCCTTCTCTTCTATACGCTTCATCATCCCCTGCCTTAGATGACGCAAACATTCCATC
CACCTCTGCCATTGATACCACCATCACAGATCGGATCTTCATGGACTTCAGTGTCTGCCC
TAGCTACTTTCGCTCTGACCGCACTTTAGGAGCTGAGCTTGCTACATGTCCTGATTCTGA
ACCTCTTGGTCGTGTAATTTTTGGTTTGTATGGTCGACTCCTCCCCCTCACTACTGCCAA
CTTCAAAGCTGCTTGCACTTCTGCTGCATACCGGGGAACACTTGTCCACAAGCTCCTTCA
GGGCCAGTTCTTCGTTGCTGGCCGCCAAGGTCCTCGGCGTGACAGGGGCGAGGTCCAACC
TCCCACCGGACTTGTGAGGAATGCTGAGACTATTGACCCTAAAGCATTTGAACTAAAGCA
TGCAAGGCCTGGCACCCTCTCATTGTGCCTTGGACAGAACGATGACGATGATGACATCAA
GCTCAATCCTAATTATCACAATGTTGAATTCTTGGTTACCACTGGACCAGGGCCCTGCCC
AGAGCTTGATGGACAGAACATTGTCTTTGGAACTGTATTGGAAGGAATGAATGTTATAAC
CAGCATTGCAACTATTCCTACCTATAAACCAGCTGAAAGGATCCGCTTCTTCAATGATTT
TGCCCAGTTGATTGGTGATGAAAGAGCTCAAACTGCTCGAGCGTTGTGGGATCGCCCGCT
AAAAACTGTTTATATCAGTGATTGCGGAGAGCTAAAAGTGACCAAACCATCACTTTCCCC
TCCAAGTCTGCCATAAAAAACCACAGAGGCAATTTTGTGTACCTACACTTATTCTTCTCC
CTCCAATGTCAACTGTATATATGCCATCTAGTATTAACTGACATCTGCTGTGTTTCTGGC
CCAAAATGTGTACGACGGGTCTCTGATTCATCGAAGTAAATATATTACAGTGCTGTGCAA
AATTCTTGACCTGTCAGCTTTCATCTTGGATAACCGTTGAGACTATGATGCTAATGATTA
GCTTCTC