Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0292000-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:11702728:11710627:1 gene:Os08g0292000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeobox domain containing protein. (Os08t0292000-01);Hypothetical conserved gene. (Os08t0292000-02)
Sequence	TGGATTGGAGAAGTGATGAACGGCGAGCTTAAACTTATGGCTTCCTATGTGAGCAAGCTT AAGTTCATCTTGCAAAAAGATCAGCAGCAGGAGCCCCATACTGCGAACCTTCTAGTCCTA CTTGGGAGTAGCAATCAGGACAAAAGAAATGGCCTCTCACAGGGAGAAAACAGAATGGAC ACTTGTACCAGAAAGAAGCCAAGAAGATACCAACTCCTCACCATGCAACAAAAAGAAACG CTTAATCGTGCATTTCAATCATGTCCGAACCCTGATAGAAATGACTTGAAGAAGTTGGCC AAGGAACTAAACATGACTGAGACCCAAATCAAATATTGGTTCCAGAACTGCAGGACAAAG ATGAAGAAATTCAAGAACAATGAGGAGCGCAAACTACTGCAGAAGGAGAATGAGGAGCTA AAGAAGGAGAATGCAGAGTTGAGAAATAGGATGAAGAACTCAACATGCCGCGCTTGTGAC CTCCCTTTGTTCCATATAGATTGCCGTCATTGGGAGAATCCAATGCTCAACAAGGGTAAT CATGGCGTTACAAGTAATCTCATTCCTCAGGCAGTGTCATCCTTGCTCCCCAGCTCAAGT GGTTTTGTAGCTTCAGGCTCCAATCTTAGTAGCAATGCTGTGCTCATGCCCGTATCTGCC ATGCCATCATCAGTTTTGCAGCCTGCTCCAGCCGTCTCTGGTGCCAATTTTCCCATCTTG CACAATCTATCTGCCAATGCAAATGATGGCTATACGGAAAAAAACGTACTTCTTGATCTG GCGAACCGTGCAATGGAAGAGTTCTTTAGTCTAATGAAGGAGAATGAGTCTCTTCTTGTC AAAAAAAAGGAGAATGGGCCTCTCTGGCTCCCACACATGGATATTCTGGGAGTCGAATCA CTTAACTACCAGGAATACCTTGCAAAATCCAGGACGATTGGACAAAAACCTGTTGACTTC AAAGTGGTCGTCACCAGGGACACTGCCATTGTCAATGGTAGCTGTGTTGACCTCGTCAAA AGCCTTTTGGATGCTAACCGCTGGAGAGAGTTGTTTCCAGGCATCGTGGCAAGTGCAAAC ACCACCAAGATCATCTCTACTGGGCCCTCTAACTTGCACGACGGGTTGCTTCAATTGATG CGTGCAGAGCTCCAGGTAATGTCACCTGAAGTCCCAGTTTGCGATGTGACATTCTTGAGG CAGAGTGTGCAGTTTGGAAGTGGACTGTGGTGTGTGGTTGATGTGTCTATTGATACCATC CTTCCTGGAGAGAGTAAAACAGCTCAGTCCAGTGTGCAGACCAGCAGTACAGCTGCCAGA CGCATGGAAGTCAGGCTGTTGCCATCAGGCTGTGTTATTGAAGAAATGGAGAATGGCTAT TCCAAGGTGACCTGGATGGTGCATGCAGCTTATGATGAGAGAGCAGTGCCAGTGCTTTAT CATTCACTTCTCCGCTCTGCAAAAGCCCTTGGTGCGTGCCGCTGGGTAGCATCACTCCAG AGACACAGCCAGTTCCTTTCCGGCCTGCACAAATACATCTTTTGTCCTGACAGCACAAAA GTGGTGATGCGAAGAAAAGTCCTGTACCTGGTGAAGCAGATGACGAGCAGCTTCACAGGC CTATTTGCGTCGATGTCTAAGGCCACGCTGCAAGATGGTGATGATACTCACTTCGCGCAT CAGATAGTTGGTGGTGCAACAGGTGAACCTGCCGGACTGCTGCTGAGCGCCACCACAACC ATATGGCTCCCCGGCGTGAACCCGAGGCACGTGTATGACCACCTGCGTGATGAGCAGTGC CATGGTGAATGGCGCTGCCTCCTCGGTGAGCAGCTGCATCAGGGCAATGCCTTGCCGTAT GGTGCCCCCCTGAATGGTGAGACCGTGCCAGAGTTCTATCGCATGGTGAACGGGCTGCAT GAAGGGCATGCTATCTCCCTGATCAGCCCCAGAGAAATGGGTGGTAACATAAGCAACACT CTGCTCCTGCAAGAGGCAAGAACTGATCTTTCTGGCTCCCTCATAGTTTACGCCAGGACA GATGTGAACACCGTGCATTCCATCATGAACAGTGGCCTCAACCCTGCCACCGTCTTCCTC GTATCCTCTGGATGTGCCATTCTTCCTGATTGCCTGGAATCATTCCCTCTACACCCAGCT GCAACTGC

Peptide Sequence

PEP ID	Os08t0292000-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:11702728:11710627:1 gene:Os08g0292000 transcript:Os08t0292000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeobox domain containing protein. (Os08t0292000-01);Hypothetical conserved gene. (Os08t0292000-02)
Sequence	WIGEVMNGELKLMASYVSKLKFILQKDQQQEPHTANLLVLLGSSNQDKRNGLSQGENRMD TCTRKKPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTK MKKFKNNEERKLLQKENEELKKENAELRNRMKNSTCRACDLPLFHIDCRHWENPMLNKGN HGVTSNLIPQAVSSLLPSSSGFVASGSNLSSNAVLMPVSAMPSSVLQPAPAVSGANFPIL HNLSANANDGYTEKNVLLDLANRAMEEFFSLMKENESLLVKKKENGPLWLPHMDILGVES LNYQEYLAKSRTIGQKPVDFKVVVTRDTAIVNGSCVDLVKSLLDANRWRELFPGIVASAN TTKIISTGPSNLHDGLLQLMRAELQVMSPEVPVCDVTFLRQSVQFGSGLWCVVDVSIDTI LPGESKTAQSSVQTSSTAARRMEVRLLPSGCVIEEMENGYSKVTWMVHAAYDERAVPVLY HSLLRSAKALGACRWVASLQRHSQFLSGLHKYIFCPDSTKVVMRRKVLYLVKQMTSSFTG LFASMSKATLQDGDDTHFAHQIVGGATGEPAGLLLSATTTIWLPGVNPRHVYDHLRDEQC HGEWRCLLGEQLHQGNALPYGAPLNGETVPEFYRMVNGLHEGHAISLISPREMGGNISNT LLLQEARTDLSGSLIVYARTDVNTVHSIMNSGLNPATVFLVSSGCAILPDCLESFPLHPA AT

Transcript Sequence

Transcript ID	Os08t0292000-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:11702728:11710627:1 gene:Os08g0292000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeobox domain containing protein. (Os08t0292000-01);Hypothetical conserved gene. (Os08t0292000-02)
Sequence	CGGAGCCCCTGCCCCCTCTCGGGCGGCGCGGCGGGGACCGGGGCTCACCGCGGCCATGCG CTGTTCTTGCTATCCCTCTCGTCAGTTTGTGCCCTCACCCTGATGATTTCCGTTTCACTA GCCTTGCACTTCTTGTCTTCTTCCACTCAACAGGTTGGCGCTAGGTTTTGCCGATTGGGG ATGAACTCGTGACGAAATTGCAATGTGGGGCTCTCTCTCGGTAATGGATTGGAGAAGTGA TGAACGGCGAGCTTAAACTTATGGCTTCCTATGTGAGCAAGCTTAAGTTCATCTTGCAAA AAGATCAGCAGCAGGAGCCCCATACTGCGAACCTTCTAGTCCTACTTGGGAGTAGCAATC AGGACAAAAGAAATGGCCTCTCACAGGGAGAAAACAGAATGGACACTTGTACCAGAAAGA AGCCAAGAAGATACCAACTCCTCACCATGCAACAAAAAGAAACGCTTAATCGTGCATTTC AATCATGTCCGAACCCTGATAGAAATGACTTGAAGAAGTTGGCCAAGGAACTAAACATGA CTGAGACCCAAATCAAATATTGGTTCCAGAACTGCAGGACAAAGATGAAGAAATTCAAGA ACAATGAGGAGCGCAAACTACTGCAGAAGGAGAATGAGGAGCTAAAGAAGGAGAATGCAG AGTTGAGAAATAGGATGAAGAACTCAACATGCCGCGCTTGTGACCTCCCTTTGTTCCATA TAGATTGCCGTCATTGGGAGAATCCAATGCTCAACAAGGGTAATCATGGCGTTACAAGTA ATCTCATTCCTCAGGCAGTGTCATCCTTGCTCCCCAGCTCAAGTGGTTTTGTAGCTTCAG GCTCCAATCTTAGTAGCAATGCTGTGCTCATGCCCGTATCTGCCATGCCATCATCAGTTT TGCAGCCTGCTCCAGCCGTCTCTGGTGCCAATTTTCCCATCTTGCACAATCTATCTGCCA ATGCAAATGATGGCTATACGGAAAAAAACGTACTTCTTGATCTGGCGAACCGTGCAATGG AAGAGTTCTTTAGTCTAATGAAGGAGAATGAGTCTCTTCTTGTCAAAAAAAAGGAGAATG GGCCTCTCTGGCTCCCACACATGGATATTCTGGGAGTCGAATCACTTAACTACCAGGAAT ACCTTGCAAAATCCAGGACGATTGGACAAAAACCTGTTGACTTCAAAGTGGTCGTCACCA GGGACACTGCCATTGTCAATGGTAGCTGTGTTGACCTCGTCAAAAGCCTTTTGGATGCTA ACCGCTGGAGAGAGTTGTTTCCAGGCATCGTGGCAAGTGCAAACACCACCAAGATCATCT CTACTGGGCCCTCTAACTTGCACGACGGGTTGCTTCAATTGATGCGTGCAGAGCTCCAGG TAATGTCACCTGAAGTCCCAGTTTGCGATGTGACATTCTTGAGGCAGAGTGTGCAGTTTG GAAGTGGACTGTGGTGTGTGGTTGATGTGTCTATTGATACCATCCTTCCTGGAGAGAGTA AAACAGCTCAGTCCAGTGTGCAGACCAGCAGTACAGCTGCCAGACGCATGGAAGTCAGGC TGTTGCCATCAGGCTGTGTTATTGAAGAAATGGAGAATGGCTATTCCAAGGTGACCTGGA TGGTGCATGCAGCTTATGATGAGAGAGCAGTGCCAGTGCTTTATCATTCACTTCTCCGCT CTGCAAAAGCCCTTGGTGCGTGCCGCTGGGTAGCATCACTCCAGAGACACAGCCAGTTCC TTTCCGGCCTGCACAAATACATCTTTTGTCCTGACAGCACAAAAGTGGTGATGCGAAGAA AAGTCCTGTACCTGGTGAAGCAGATGACGAGCAGCTTCACAGGCCTATTTGCGTCGATGT CTAAGGCCACGCTGCAAGATGGTGATGATACTCACTTCGCGCATCAGATAGTTGGTGGTG CAACAGGTGAACCTGCCGGACTGCTGCTGAGCGCCACCACAACCATATGGCTCCCCGGCG TGAACCCGAGGCACGTGTATGACCACCTGCGTGATGAGCAGTGCCATGGTGAATGGCGCT GCCTCCTCGGTGAGCAGCTGCATCAGGGCAATGCCTTGCCGTATGGTGCCCCCCTGAATG GTGAGACCGTGCCAGAGTTCTATCGCATGGTGAACGGGCTGCATGAAGGGCATGCTATCT CCCTGATCAGCCCCAGAGAAATGGGTGGTAACATAAGCAACACTCTGCTCCTGCAAGAGG CAAGAACTGATCTTTCTGGCTCCCTCATAGTTTACGCCAGGACAGATGTGAACACCGTGC ATTCCATCATGAACAGTGGCCTCAACCCTGCCACCGTCTTCCTCGTATCCTCTGGATGTG CCATTCTTCCTGATTGCCTGGAATCATTCCCTCTACACCCAGCTGCAACTGC