Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0290000-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:11548007:11554951:-1 gene:Os08g0290000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0290000-01)
Sequence	ATGAGACCACCACCACCCCACCTCCTCCTCCTCCTCCCCCGCCGCCGCCGCCACGCCTCC TCCTCCTCCGCCGCCGCCGCCGCCGCCGGAGAGCTCGTCGGCGCCCTCTCCGCCTTGCCC TCCCCCGACTCGGCGCGACACCTCGACGCCCTCCTCCGTCGCATCGGCGGCGGTGGCCTC GCCGCCGTCCTCTCGTCCCTGCCCTCCCCTCTCCCCGCGGCCTCCGCCCTCCGCCTCCTC CTCCACCTCCTCTCCAGGACCTCCTCCACCTCCTCCCGCTCCGAGGATGACCTCCTCACC CCGCGCGTCTCGGCGCTCCTCCTGCCCTCCCTCATCGCCGATCGCACCGCCATCCGGACG GCGCGCCGCCTCCTCTCACGACTCCTCCACGTCCACCCGCTCCGCACCGCCGCGGAGGCG GTCGCCGACGCCGCCTCCACCCCCTCCTCGGACTTCCTCATCCACACCTTCATCACCTCC CCGGCCCAAGGCTCCCTCTGCAGGGCCGCCGACGCGTTCCGCGTTCTCTCCTCGCGCGGC GCGCCGCCCTCCATCAAGACCTGCAATGCGTTCCTCGAAGCCCTTGTTCGTGCAGGTCAG CTCGATGCCGCCCGCGAGGTGTTCGACGAAATGCGTGAAAGCAGGAACGTCGCTCTGAAT GAGTACTCGTATACCGCCATGATCAAGGCGCTCTGCAAGGCTGGAAAGGTGGATGCTGGT TTTGAGATGCTTGCAGAGTTATGGCGGGCTGGGCTTCAGCCAACGGTTGTGACGTACAAT GTGCTTATGGATGCACTGTGTAAGAGTGGGAGGGTGGAGGAGGCCTTTCGATTGAAAGGG AGGATGGAACAGGGAGGGATGACACCAAGCGTGGTCACATTCGGTATATTGATCAATGGT CTTGCAAGGGGCGAGCGGTTTGGGGAGGTTGGCATTGTATTGCAGGAGATGGAACAGTTA GGGGTTTCCCCCAATGAGGTTATTTACAATGAGCTTATTGGTTGGCATTGTAGGAAGGGC CATTGCTCACAGGCACTCAGGTTGTTTGATGAAATGGTTTTAAAGAAGATGAAGCCAACA GCCGTGACTTATAACTTGATTGCAAAGGCACTGTGCAAGGAAGGGGAGATGGAGCGGGCT GAGAGGATATTGGAGGATATGTTGTCAATTGGAATGACAGTTCATTGTGGTTTGTTCAAT ACAGTGGTTGCATGGCTTCTTCAAAGAACCAGAAGATTGGAGTCAGTGGTAAGCATTACA AATGAAATGGTTACACGAGGTATGCGCCCAAATGATCCTCTGATGACAGCTTGTATGAGG GAGCTTTGCAAGGGAGGGAAACATCAAGAAGCAGTTGGGATTTGGTTCAAGACATTGAAC AAAGGTTTAGGTGTTAATCTTGCAACTTCCAATGCGCTAATTCATGGTCTTTGTGAAGGT AAGTACATGAAAGAAGCTACAAAGGTTATACAGACCATGTTAAATAAGGGAATTGAATTG GATAGCATCACATATAACATTATGATTCGAGGTTGCTGCAAAGACAGTAAAATGGAGGAA GCTATTAAACTCCATGGCGACATGACCAGAAGAGGGTTTAAGCCTGATCTTTTCACATTT AATACTTTATTGCATGCTTATTGCAATTTGGGTAAAATGGAGGAAACCTTTCATCTGTTG GATCAGATGAAAACTGAGGGCCTTCAGCCTGATATAGTGTCATATGGCACTATAATAGAT GGTCATTGTAAAGCAAAGGATATTCGTAAAGCAAAAGAATATTTGACTGAATTGATGGAT CGTGGACTTAAACCTAATGTGTTCATTTATAATGCACTTATTGGTGGTTATGGTAGGAAT GGTGACATCTCTGGTGCAATTGATGCTGTTGAGACTATGAAGTCTAATGGCATACAACCA ACTAATGTGACTTATGGTAGTCTTATGTACTGGATGTGTCATGCTGGTCTAGTTGAAGAG GCCAAGACCATTTTTTCACAAGCCAGGGAAAACAATGTTGACCTGGGAGTAATTGGTTAC ACAATTATGATTCAAGGTTACTGCAAACTAGGAAAAATGGTTGAAGCTGTTGCATACTTT GAGGAGATGCGTTCCAGGGGTATATCTCCAAATAAGCTTACTTACACTACTCTTATGTAT GCTTACTCTAAATCTGGTAACAGTGAAGAAGCTTCCAAGCTTTTCGATGAGATGGTGGGC TCAGGTGTTATTCCTGACAATATTACTTATGGTACACTAATTGCAAGGTGTTCTGAGGTA AATTCATTGGATAAGGATATAGGACATACTGCTGAATTGTCCTCAGGCGCTTTAACAAAA GATGATCGTATGTATAACATATTATCTAATGGAATTAATGCTCCTTGGTGCCAGAAAGAA GCTGCTTCCAGTGTTGAATGA

Peptide Sequence

PEP ID	Os08t0290000-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:11548007:11554951:-1 gene:Os08g0290000 transcript:Os08t0290000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0290000-01)
Sequence	MRPPPPHLLLLLPRRRRHASSSSAAAAAAGELVGALSALPSPDSARHLDALLRRIGGGGL AAVLSSLPSPLPAASALRLLLHLLSRTSSTSSRSEDDLLTPRVSALLLPSLIADRTAIRT ARRLLSRLLHVHPLRTAAEAVADAASTPSSDFLIHTFITSPAQGSLCRAADAFRVLSSRG APPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAG FEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILING LARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPT AVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSIT NEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEG KYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTF NTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMD RGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEE AKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMY AYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTK DDRMYNILSNGINAPWCQKEAASSVE

Transcript Sequence

Transcript ID	Os08t0290000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:11548007:11554951:-1 gene:Os08g0290000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0290000-01)
Sequence	CGAACCTCCGCCATGAGACCACCACCACCCCACCTCCTCCTCCTCCTCCCCCGCCGCCGC CGCCACGCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGGAGAGCTCGTCGGCGCCCTC TCCGCCTTGCCCTCCCCCGACTCGGCGCGACACCTCGACGCCCTCCTCCGTCGCATCGGC GGCGGTGGCCTCGCCGCCGTCCTCTCGTCCCTGCCCTCCCCTCTCCCCGCGGCCTCCGCC CTCCGCCTCCTCCTCCACCTCCTCTCCAGGACCTCCTCCACCTCCTCCCGCTCCGAGGAT GACCTCCTCACCCCGCGCGTCTCGGCGCTCCTCCTGCCCTCCCTCATCGCCGATCGCACC GCCATCCGGACGGCGCGCCGCCTCCTCTCACGACTCCTCCACGTCCACCCGCTCCGCACC GCCGCGGAGGCGGTCGCCGACGCCGCCTCCACCCCCTCCTCGGACTTCCTCATCCACACC TTCATCACCTCCCCGGCCCAAGGCTCCCTCTGCAGGGCCGCCGACGCGTTCCGCGTTCTC TCCTCGCGCGGCGCGCCGCCCTCCATCAAGACCTGCAATGCGTTCCTCGAAGCCCTTGTT CGTGCAGGTCAGCTCGATGCCGCCCGCGAGGTGTTCGACGAAATGCGTGAAAGCAGGAAC GTCGCTCTGAATGAGTACTCGTATACCGCCATGATCAAGGCGCTCTGCAAGGCTGGAAAG GTGGATGCTGGTTTTGAGATGCTTGCAGAGTTATGGCGGGCTGGGCTTCAGCCAACGGTT GTGACGTACAATGTGCTTATGGATGCACTGTGTAAGAGTGGGAGGGTGGAGGAGGCCTTT CGATTGAAAGGGAGGATGGAACAGGGAGGGATGACACCAAGCGTGGTCACATTCGGTATA TTGATCAATGGTCTTGCAAGGGGCGAGCGGTTTGGGGAGGTTGGCATTGTATTGCAGGAG ATGGAACAGTTAGGGGTTTCCCCCAATGAGGTTATTTACAATGAGCTTATTGGTTGGCAT TGTAGGAAGGGCCATTGCTCACAGGCACTCAGGTTGTTTGATGAAATGGTTTTAAAGAAG ATGAAGCCAACAGCCGTGACTTATAACTTGATTGCAAAGGCACTGTGCAAGGAAGGGGAG ATGGAGCGGGCTGAGAGGATATTGGAGGATATGTTGTCAATTGGAATGACAGTTCATTGT GGTTTGTTCAATACAGTGGTTGCATGGCTTCTTCAAAGAACCAGAAGATTGGAGTCAGTG GTAAGCATTACAAATGAAATGGTTACACGAGGTATGCGCCCAAATGATCCTCTGATGACA GCTTGTATGAGGGAGCTTTGCAAGGGAGGGAAACATCAAGAAGCAGTTGGGATTTGGTTC AAGACATTGAACAAAGGTTTAGGTGTTAATCTTGCAACTTCCAATGCGCTAATTCATGGT CTTTGTGAAGGTAAGTACATGAAAGAAGCTACAAAGGTTATACAGACCATGTTAAATAAG GGAATTGAATTGGATAGCATCACATATAACATTATGATTCGAGGTTGCTGCAAAGACAGT AAAATGGAGGAAGCTATTAAACTCCATGGCGACATGACCAGAAGAGGGTTTAAGCCTGAT CTTTTCACATTTAATACTTTATTGCATGCTTATTGCAATTTGGGTAAAATGGAGGAAACC TTTCATCTGTTGGATCAGATGAAAACTGAGGGCCTTCAGCCTGATATAGTGTCATATGGC ACTATAATAGATGGTCATTGTAAAGCAAAGGATATTCGTAAAGCAAAAGAATATTTGACT GAATTGATGGATCGTGGACTTAAACCTAATGTGTTCATTTATAATGCACTTATTGGTGGT TATGGTAGGAATGGTGACATCTCTGGTGCAATTGATGCTGTTGAGACTATGAAGTCTAAT GGCATACAACCAACTAATGTGACTTATGGTAGTCTTATGTACTGGATGTGTCATGCTGGT CTAGTTGAAGAGGCCAAGACCATTTTTTCACAAGCCAGGGAAAACAATGTTGACCTGGGA GTAATTGGTTACACAATTATGATTCAAGGTTACTGCAAACTAGGAAAAATGGTTGAAGCT GTTGCATACTTTGAGGAGATGCGTTCCAGGGGTATATCTCCAAATAAGCTTACTTACACT ACTCTTATGTATGCTTACTCTAAATCTGGTAACAGTGAAGAAGCTTCCAAGCTTTTCGAT GAGATGGTGGGCTCAGGTGTTATTCCTGACAATATTACTTATGGTACACTAATTGCAAGG TGTTCTGAGGTAAATTCATTGGATAAGGATATAGGACATACTGCTGAATTGTCCTCAGGC GCTTTAACAAAAGATGATCGTATGTATAACATATTATCTAATGGAATTAATGCTCCTTGG TGCCAGAAAGAAGCTGCTTCCAGTGTTGAATGATGTGTGGTCAAGGAACCTTAGGGCACA CCTTCTTTGTTCTGACAAGAACCGTCCAAGAATGAACAGGGAGTAGGGAGAACATGTGGC CACTGATTCTGCCTTTGATCTTATGAATTTTACATCTCCTAACAGTTCCCTCCAATTCAT TTGGTCATGGTCAATCTTTGGGAGCTATCCAGCAACAGCAGAGGTTGTTCTGAACATTTC TGCTCAAGTTTACATGATCATCCACCTACTGTCTTGGGTGGGGTATCCAACAGCAGCAAC AGATTGCCCTGAATGTTTATAATTGGGGGAAAAACAACCCAATATGGACAAGAACTGCAC TGTGACCTATCAAAGCTCTTATCTGCGGACTGGATAATGGATACACAGGTTCACTTTGGT CATCAACTAAAGCACCTTGAGAGCCAATGTATGGATGATAATGCAAGATGGTTGTTGAAC CATAATACCAGCTGCAAATTTCAAAAGGATTGCCAGCATACTATGGCGGCGCAATGTGTG GTGGGAAACCTCACAATGCTGGTTATTCTGCATCCTGCCACCTGCTGGCATAACAGCCAT CAGGAGTTTAGTACCTGGTGACTAGACAGCCTGTCAACATGGCCACATGGGCGTTTGCAC CATGACCCCAGGTCATGTGGAATCACCTGTTTTTATTTACATATGTTTAAGAGGACAGGA AGTGAGGAAACTTACAGATTTACTGTTGCTTGGGTTTATTTATGGCATCATATAAATATT TAGGCTATTTCTATGAAAATACAATGTCCTTAAATACTGGTATATAAGTTTAGAACAATC TCTCTCTGATCTTTATTGGTAATTGCGTTCTTTCTTATCTTTTTTTGTTTATGCAGTTCT CTGAATACTGAATTTTGTCAGGTTATTTGCGTCGTATCATCCTCTCAGAGATTTGCCATT TTACAAGCTCTCCACAAAGAACACCATATTCTCCTCAATTGAAATTTTGGGGGGAAACAT CAACGTTGATTGGGATGGTGTTGAGTGTGATCAATTGCAAGATGGTGGGCATTGTTACCA TGGGGTTTTCATGCCATTGGGTTGATGGAGATGTTGATGCCCCCAGCAGGCACAAGGCAG GCCTTGTCTTTCTGATGCAACTGAACCTACTCCACTAATTCGCTGTGGACATTGACATGG ATTAAGATATGGCATAGCTGATCCTAAAATCAATTAGGCAAGAAGGCTGTCAGAAAATGG GAAAGGATGACATCATGGCAGCCAGGTTGTAAATCAACTAATGTGCACATGCAGTTTCTG TTCAACTAGTATTATACTGACGTGCTGTTTTGATTTGGGGAAAGAAAGATGGAGCAAATA GTTTTCATGTTTTGAGTACTGTGTTGAGATCCTGTAAGCAATATTACATGTTAGATGTCT TCAACAGGCGCTGAAGTTGATTGTGGCATATGGCCATACCTTTTACTACCTGTACAATTC AGGGGTTGTATTTGTACAGTGCTGATTTATAGTCTATATGCAGAAGTATAAATAATGTAG TAGTATGACAAATTTTGGATCTTTATGAATGTGTTGGTTTTGCTACC