Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0289400-00
CDS Infomation	cds chromosome:IRGSP-1.0:8:11512090:11528238:-1 gene:Os08g0289400 gene_biotype:protein_coding transcript_biotype:protein_coding description:SNF2-related domain containing protein. (Os08t0289400-00)
Sequence	CCACTAGAATGGATGCAAAAACAGAAGGACAGCTCAGCAATAATAGTTCTTGATTCCGAT GATGAGGACGAATACACGGAAGGATGTGAACAGCTCACATCTGAGAACAATAAAGAACAG GCACCATCTGGACCCACTAGTCCTTACACGACATGGATTGTATCCAGCACGAAAGACCAA GTAAATGGAACCTTGCATGTTGATGGAGTCCAAAGCACTCAAATTGTTCCATATGGTCAA AATGCACCGTTAATAAATCAGTTCCCTTTGCAAACCAGCTGGCAACCATCTATCCAATAT GAAAGGGTTATATTGCAGAAAAGACCTGAGGAGCAACGCGTTCAAGATCTGGTGGCAGCA AGCCATGCAGAGAAGATAGCAGAAACACAAGTTCTCCTTACTCTTCCTACTCTTCCTACT GAGAGAAAACGAAGGAAAACAGAACCCACCACCCTGGTAGATGTTGATGGTGGAACTAAC CTAGGAAAAAGAAAAAGGAAAAATCATCAAAATCAAGCAGCAGTTGATTCAAACTTGGAT TTGCAACAAAATGATGTTCCTTCACAAAGCTACAGGACTATGATAGAAGAGGAGAAACCT GTAAAAGAAAGTGAAGGTCTCGAGGATCTTTGGAAAGATTTTTCATTGGCTGCTGAATGT ACAAAGCTTGATACAAATGAAGACATGTCCAATGAAAAAGATGTGGATGATGAAAATGAG ATGGATGATGACTGCAATCATGACATTCGGATTCATGAAGATCTAGGCCACGTATGCCGT ATTTGTGGCATGATTGTTAGAAAGGCTGAAACAATAATTGATTATCAGTGGAAAAAGGCT TCAAGGACAAGAACAAATTACTATGAATCACGTTCAAAGGATGCTGATGAGATTGATACT GGTGCTGTTAAAGTTTCCGAAGATTTCATTGTCTCTGATATTGCCATTCATCCAAGACAT GCGAAGCAAATGAGACCACATCAGTTGGAAGGATTCAGCTTCCTGGTCAAGAATCTAGTC GGAGACAAACCTGGAGGTTGCATTCTAGCTCATGCTCCTGGTTCAGGGAAGACATTTATG CTCATAAGTTTCATTCAAAGCTTCTTAGCAAAGTATCCTTCTGCAAGGCCCCTTGTAGTG CTTCCGAAAGGGATTGGGAGTACTTGGAAGAGGGAGTTTCAGTGGTGGCAAGTGGAGGAC ATACCACTATATGATTTCTATTCTGTTAAGGCTGACAAAAGAGTAGAGCAACTGGAAGTC CTCAAATATTGGGAAGCCCAGATGAGCATACTATTTCTTGGATACAAGCAGTTCTCACGA ATCATCTGTGGTGATGGAGATGGAAACATTGCAGCTGCGTGCTGGGACAGGCTGCTTATG GTACCCAACCTACTTATACTAGACGAGGGTCATACACCAAGAAATCGGGAGACAGATGTA CTGGCATCACTAAAAAGACACCACGCAAAGTGGTCCTGTCTGGTACACTTTTCCAGAACC ACGTTTCGGAAGTGTTTAACATCTTGGACCTTGTGCACCCTAAGTTTCTCAAGATGGAAT CGTCCCGTCCTATTGCTAGACGTATAA

Peptide Sequence

PEP ID	Os08t0289400-00
PEP Infomation	pep chromosome:IRGSP-1.0:8:11512090:11528238:-1 gene:Os08g0289400 transcript:Os08t0289400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:SNF2-related domain containing protein. (Os08t0289400-00)
Sequence	PLEWMQKQKDSSAIIVLDSDDEDEYTEGCEQLTSENNKEQAPSGPTSPYTTWIVSSTKDQ VNGTLHVDGVQSTQIVPYGQNAPLINQFPLQTSWQPSIQYERVILQKRPEEQRVQDLVAA SHAEKIAETQVLLTLPTLPTERKRRKTEPTTLVDVDGGTNLGKRKRKNHQNQAAVDSNLD LQQNDVPSQSYRTMIEEEKPVKESEGLEDLWKDFSLAAECTKLDTNEDMSNEKDVDDENE MDDDCNHDIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADEIDT GAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFM LISFIQSFLAKYPSARPLVVLPKGIGSTWKREFQWWQVEDIPLYDFYSVKADKRVEQLEV LKYWEAQMSILFLGYKQFSRIICGDGDGNIAAACWDRLLMVPNLLILDEGHTPRNRETDV LASLKRHHAKWSCLVHFSRTTFRKCLTSWTLCTLSFSRWNRPVLLLDV

Transcript Sequence

Transcript ID	Os08t0289400-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:11512090:11528238:-1 gene:Os08g0289400 gene_biotype:protein_coding transcript_biotype:protein_coding description:SNF2-related domain containing protein. (Os08t0289400-00)
Sequence	TGGTATCTCATTTCCTGCATCAAATAGGGCTCATGATTGGGGATATGGCGGTGTTGGCGA AGAATGGGAAACTAGTTATGCTCGCAAACTCCAGTTGATGAATTTTCTTTCTGCACTGCA TCAACGCGCTGCAAATTCTTTGGTAACCACTAGAATGGATGCAAAAACAGAAGGACAGCT CAGCAATAATAGTTCTTGATTCCGATGATGAGGACGAATACACGGAAGGATGTGAACAGC TCACATCTGAGAACAATAAAGAACAGGCACCATCTGGACCCACTAGTCCTTACACGACAT GGATTGTATCCAGCACGAAAGACCAAGTAAATGGAACCTTGCATGTTGATGGAGTCCAAA GCACTCAAATTGTTCCATATGGTCAAAATGCACCGTTAATAAATCAGTTCCCTTTGCAAA CCAGCTGGCAACCATCTATCCAATATGAAAGGGTTATATTGCAGAAAAGACCTGAGGAGC AACGCGTTCAAGATCTGGTGGCAGCAAGCCATGCAGAGAAGATAGCAGAAACACAAGTTC TCCTTACTCTTCCTACTCTTCCTACTGAGAGAAAACGAAGGAAAACAGAACCCACCACCC TGGTAGATGTTGATGGTGGAACTAACCTAGGAAAAAGAAAAAGGAAAAATCATCAAAATC AAGCAGCAGTTGATTCAAACTTGGATTTGCAACAAAATGATGTTCCTTCACAAAGCTACA GGACTATGATAGAAGAGGAGAAACCTGTAAAAGAAAGTGAAGGTCTCGAGGATCTTTGGA AAGATTTTTCATTGGCTGCTGAATGTACAAAGCTTGATACAAATGAAGACATGTCCAATG AAAAAGATGTGGATGATGAAAATGAGATGGATGATGACTGCAATCATGACATTCGGATTC ATGAAGATCTAGGCCACGTATGCCGTATTTGTGGCATGATTGTTAGAAAGGCTGAAACAA TAATTGATTATCAGTGGAAAAAGGCTTCAAGGACAAGAACAAATTACTATGAATCACGTT CAAAGGATGCTGATGAGATTGATACTGGTGCTGTTAAAGTTTCCGAAGATTTCATTGTCT CTGATATTGCCATTCATCCAAGACATGCGAAGCAAATGAGACCACATCAGTTGGAAGGAT TCAGCTTCCTGGTCAAGAATCTAGTCGGAGACAAACCTGGAGGTTGCATTCTAGCTCATG CTCCTGGTTCAGGGAAGACATTTATGCTCATAAGTTTCATTCAAAGCTTCTTAGCAAAGT ATCCTTCTGCAAGGCCCCTTGTAGTGCTTCCGAAAGGGATTGGGAGTACTTGGAAGAGGG AGTTTCAGTGGTGGCAAGTGGAGGACATACCACTATATGATTTCTATTCTGTTAAGGCTG ACAAAAGAGTAGAGCAACTGGAAGTCCTCAAATATTGGGAAGCCCAGATGAGCATACTAT TTCTTGGATACAAGCAGTTCTCACGAATCATCTGTGGTGATGGAGATGGAAACATTGCAG CTGCGTGCTGGGACAGGCTGCTTATGGTACCCAACCTACTTATACTAGACGAGGGTCATA CACCAAGAAATCGGGAGACAGATGTACTGGCATCACTAAAAAGACACCACGCAAAGTGGT CCTGTCTGGTACACTTTTCCAGAACCACGTTTCGGAAGTGTTTAACATCTTGGACCTTGT GCACCCTAAGTTTCTCAAGATGGAATCGTCCCGTCCTATTGCTAGACGTATAATGAGTCA GGTAGCAATATCAGGTATCAGAGTTTAAAAGGGGTTCATGACAGTGCATTCACTGAGTCA GTGGAAGACACCCTGCTGAATGATGACAACTTCACTAGAAAAGCCCATGTTATTAGAAGT CTTAGAGAATTAACAAAAGATGTGCTTCACTATTACAAGGGCGATATCTTAGATGAACTA TCTGGCCTAGTGGATTTTAGTGTGTTCTTGAAACTCAGTAACAAGCTGAAAGAAATTGTT CACTATAGAAGCTTATGAAAAGTTCAAAAGAAGTGCAGTGGGGACTGCATTGTACATTCA TCCCTGCCTGTCAGAAATTTCAGAGGGTGATGCTGCAGATAGGGCGAGCAACTTGACAGA TGCCACTGTTGACAGCTTGATTGAGTCTATCATCATTAAAGATGGGGTGAAAGCCAAGTT TTTCTTTAACATTATGTCTCTTGCTAACTCTGCAGGAGAGAAGTTGCTTGCCTTCAGTCA ATATATACTTCCCATGAAATTTTTGGAAAGGTTGTTGGTTAAGAGGCTGGGCTGGCATGT AGGGAAGGAGATTTTCATGATATCTGGTGATACTAGTGCAGACGACAGAGAAGTGGCGAT GGATCAGTTTAACAACTCTGCCGATGCAAAAGTTTTGTTTGGTTCCATCAAGGCCTGTGG AGAGGGAATCTCCCTTGTTGGTGCATCTCGAGTCATCATTCTAGATGTTCATTTGAACCC ATCTGTCACCCGTCAAGCAATCGGACGTGCATTCAGGCCCGGACAGCAGAAGAAAGTGTT TGTGTACAGGCTTGTTGCTGCTGATTCTCCAGAGGTGAAGTTCCATGAAACTGCATTCAA GAAAGAAGTTATCCCAAAGCTATGGTTTGAATGGAGTGAGCTCTGCACTACTGAAGACTT CAAACTGAATCAAGTTGATATTGATGACTCTGAAGATGAACTATTGGAGGCTAATGCTAT TCGCCAGGATATCAAGGCTTTGTATAGAAGGTAACAAGTTATATGTGGCTGCTGTACACC ATGTACATAATGCAATGCTGATCTTTCTGGGTGATCATCGCTGTGAAGATGTTACAGTAG CCCCTTCTAATGCCGGAGTTCCGTTCATGCTAGGATTTATCGTTAACCTCGGTCGTTTCC CTACCTATTTGAACCACTGTCCGCTTTGTTAACATGTGCCAGCTTGGCGCAGCGGTTCGC GAGCTGATCCTAGTCTTATTTCCTTCTGAAGATCTCCAGGACTAATAACTATGGTTTCTG CCGTTCCTGCTAACAACTTAAATAATGCCACTGTTTCCTTACCTGTCTTTTGTGCACTT