Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0272200-00
CDS Infomation	cds chromosome:IRGSP-1.0:8:10453730:10456174:1 gene:Os08g0272200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0272200-00)
Sequence	ATGACCAAAAAATCTTCCCCAAAACACCCCCCTCTCTCCGCACCGCACCTCATTTCCCAC TCGCCGTTGCCTCGCCTCCCACCTCGCATGGCGCCGCCGCCGCTCGCCGCCGCCGCCCTC CGCCGCCACGTCCTACGCGCCCTCCTCCCCCAATCTCGGCACCTCTGCCTCCTCGCCGCC CACTCCCCCTCCCCCTCCGACGACAGCGACTTCGAGCCTCCCGACCACCCCCTCCCCCGG GCCCCCGACGGCGACGGCGAGCTCGCCGCCTTCCTCCACCGCCTCTCCGACGCCTCCACC GCCGCGTCCTCCCCGAAGCACGCGCTGTCGCTTCTCCTGTCCTCGCCGCCCTCCCCGGGC CTACCTCCTGCCTCCCGCCGCGACCTCCTCGTCCGCGCGCTCTGGGAGCTCCGCCGCGAC CCGGACGCGGCGGCCCTCGCGCTCCGGTGGGGGGAGGAGGGGTGCGCCGCCGCCGGGGAG CGCGCGGGGCCACCGCCCCCTCCCCCGCCGCCTGCCGAGGCGTGGCACCTGACCATATGG GCCGCGGGGAAGGCGCGGCGGTTCGACCTCGCGTGGGCGGTCGTGCGCCGCATGCTGCGC CGCGGGGTGCTCACCAGCCGCGCCATGGTCATCGTGATGGAGAGGTATGCAGCTGCCAAT GAAGTGAACAAAGCAATCAAGACATTTGATGCAATGGAGAAGTTTAAAACGGAAGCAGAT CAAACTGTATTTTACTCCCTTCTTCGTGCTCTTTGCAAAAATAAAAACATAGAGGATGCT GAGGAATTGCTTCTCGTGAGAAAGAAATTCTTCCCACTTACTGCAGAAGGTTTCAATATT ATTCTAGATGGTTGGTGCAATGTAATCACTGATATAGCTGAAGCAAAGAGAATTTGGAGA GAAATGTCAAATTACTGCATTACTCCTGATGGCACATCTTATACCCTCATGGTCAGTTGT TTTGCAAAAGTTGGAAACCTTTTTGATACCCTGAGGGTTTACGATGAGATGAAAAAGAGG GGTTGGACTCCTAGTATTGCTGTTTATAATTCTCTTATCTATGTCCTGACAAAAGAGAAT TGCATGAAGGATGTACAGAATATATTCACTAGAATTATCGATGAAGGCCTCCAACCAAAC GTCAAAACTTACAACAGTATGATAGTTCCGCTTTGCGAAAGTCGCAAGCTTGATGAAGCA CGGATGGTGTTGGAGGACATGATGCTGAAGGGAATTGTTCCAACCATTTTGACATACCAT ACATTTCTGAGACAAGAAAACATTGATGAAACCCTGAAGTTCTTGAAAAAAATGAAGGAT GATGGCTGTGGTCCTAAGAGTGATACATTTCTCATGCTTATTGATAGATTTTTTCAATTG AATGAACCTGGACATGCTTTGAAGCTCTGGAATGAAATGAAAAGATATGACATCAGACCT TCTTATTCACACTATATGTCAGTTGTGCAAGGTTTGATCAAACACGGATGCATGCAAAGA GCTTTAGAGTATTATGATGAAATGAAGGAAAATGGCTTTGCTTCTGATCCAAAACTTGAA AAGGAGTTCAGAACCTTTTTGTTGGCCAACAGAGACCATTGGAGAGGAGCTGGAAAATAT AATATTATTCCACAGCGTGGCAAACATTTTGCAAGGCGGTCAAGAATTCAGTGA

Peptide Sequence

PEP ID	Os08t0272200-00
PEP Infomation	pep chromosome:IRGSP-1.0:8:10453730:10456174:1 gene:Os08g0272200 transcript:Os08t0272200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0272200-00)
Sequence	MTKKSSPKHPPLSAPHLISHSPLPRLPPRMAPPPLAAAALRRHVLRALLPQSRHLCLLAA HSPSPSDDSDFEPPDHPLPRAPDGDGELAAFLHRLSDASTAASSPKHALSLLLSSPPSPG LPPASRRDLLVRALWELRRDPDAAALALRWGEEGCAAAGERAGPPPPPPPPAEAWHLTIW AAGKARRFDLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEAD QTVFYSLLRALCKNKNIEDAEELLLVRKKFFPLTAEGFNIILDGWCNVITDIAEAKRIWR EMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKEN CMKDVQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTILTYH TFLRQENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRYDIRP SYSHYMSVVQGLIKHGCMQRALEYYDEMKENGFASDPKLEKEFRTFLLANRDHWRGAGKY NIIPQRGKHFARRSRIQ

Transcript Sequence

Transcript ID	Os08t0272200-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:10453730:10456174:1 gene:Os08g0272200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0272200-00)
Sequence	ATGACCAAAAAATCTTCCCCAAAACACCCCCCTCTCTCCGCACCGCACCTCATTTCCCAC TCGCCGTTGCCTCGCCTCCCACCTCGCATGGCGCCGCCGCCGCTCGCCGCCGCCGCCCTC CGCCGCCACGTCCTACGCGCCCTCCTCCCCCAATCTCGGCACCTCTGCCTCCTCGCCGCC CACTCCCCCTCCCCCTCCGACGACAGCGACTTCGAGCCTCCCGACCACCCCCTCCCCCGG GCCCCCGACGGCGACGGCGAGCTCGCCGCCTTCCTCCACCGCCTCTCCGACGCCTCCACC GCCGCGTCCTCCCCGAAGCACGCGCTGTCGCTTCTCCTGTCCTCGCCGCCCTCCCCGGGC CTACCTCCTGCCTCCCGCCGCGACCTCCTCGTCCGCGCGCTCTGGGAGCTCCGCCGCGAC CCGGACGCGGCGGCCCTCGCGCTCCGGTGGGGGGAGGAGGGGTGCGCCGCCGCCGGGGAG CGCGCGGGGCCACCGCCCCCTCCCCCGCCGCCTGCCGAGGCGTGGCACCTGACCATATGG GCCGCGGGGAAGGCGCGGCGGTTCGACCTCGCGTGGGCGGTCGTGCGCCGCATGCTGCGC CGCGGGGTGCTCACCAGCCGCGCCATGGTCATCGTGATGGAGAGGTATGCAGCTGCCAAT GAAGTGAACAAAGCAATCAAGACATTTGATGCAATGGAGAAGTTTAAAACGGAAGCAGAT CAAACTGTATTTTACTCCCTTCTTCGTGCTCTTTGCAAAAATAAAAACATAGAGGATGCT GAGGAATTGCTTCTCGTGAGAAAGAAATTCTTCCCACTTACTGCAGAAGGTTTCAATATT ATTCTAGATGGTTGGTGCAATGTAATCACTGATATAGCTGAAGCAAAGAGAATTTGGAGA GAAATGTCAAATTACTGCATTACTCCTGATGGCACATCTTATACCCTCATGGTCAGTTGT TTTGCAAAAGTTGGAAACCTTTTTGATACCCTGAGGGTTTACGATGAGATGAAAAAGAGG GGTTGGACTCCTAGTATTGCTGTTTATAATTCTCTTATCTATGTCCTGACAAAAGAGAAT TGCATGAAGGATGTACAGAATATATTCACTAGAATTATCGATGAAGGCCTCCAACCAAAC GTCAAAACTTACAACAGTATGATAGTTCCGCTTTGCGAAAGTCGCAAGCTTGATGAAGCA CGGATGGTGTTGGAGGACATGATGCTGAAGGGAATTGTTCCAACCATTTTGACATACCAT ACATTTCTGAGACAAGAAAACATTGATGAAACCCTGAAGTTCTTGAAAAAAATGAAGGAT GATGGCTGTGGTCCTAAGAGTGATACATTTCTCATGCTTATTGATAGATTTTTTCAATTG AATGAACCTGGACATGCTTTGAAGCTCTGGAATGAAATGAAAAGATATGACATCAGACCT TCTTATTCACACTATATGTCAGTTGTGCAAGGTTTGATCAAACACGGATGCATGCAAAGA GCTTTAGAGTATTATGATGAAATGAAGGAAAATGGCTTTGCTTCTGATCCAAAACTTGAA AAGGAGTTCAGAACCTTTTTGTTGGCCAACAGAGACCATTGGAGAGGAGCTGGAAAATAT AATATTATTCCACAGCGTGGCAAACATTTTGCAAGGCGGTCAAGAATTCAGTGACATTCT GTGCCATTATTA