Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0260600-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:9784270:9786922:-1 gene:Os08g0260600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TETRASPANIN 11 description:Tetraspanin domain containing protein. (Os08t0260600-01)
Sequence

ATGGCGCCGCGGTGCAGCAACGCCGTCTTCGCGGCCATCAACGTCGTCACGCTCCTCCTG
GGCGCCGCCGTCCTCGCCGCGGGGATCTACTACGGCGCCCCGCACCGCGGCGGCGGCGGC
GTCACCGAGTGCGAGCGGTTCCTCCGCGCGCCGGCGCTCGCCCTCGGCGGCGCCATCGTG
GCCGTGTCCCTGGCGGGGCTCGCCGGCGCGTGCTGCCGCGCGACGCCGCTGCTGTGGGCC
TACCTCCTCCTGACGGGCCTCCTCATCCTCGCCGCCGCCTGCTTCGGCGTGTTCGCGCTC
GTCGTCACCAACGCCGGCGCCGGGCGGGCCGTGTCCGGGAGAGGGTTCAGGGAGTACCAC
CTCGGCGACTACTCGACGTGGCTCCGCCGGAGCGTGGAGGACGGCGGCCACTGGGCGAGG
ATCAGGAGCTGCCTCGTCGACACCGGCGTGTGCCGGAGCTTGAAGAGCAACCAGACGCTC
GACGAATTCGTCAACTCCAACCTCTCGCCGCTGCAGTCTGGATGCTGCAAGCCACCAACA
GCATGCAACTTCACATACCAGAACGAGACATACTGGATCAAGCCTCCTACACCCAGCAAC
TACTCAGACCCTGACTGCAACTCTTGGTCGAATGACCAGTCTGAGCTCTGCTACGGCTGC
CAGTCCTGCAAGGCCGGTGTTCTTGGCAACCTGAGGAGCAGCTGGAAGAAGATCGCCTTC
GTCAACGCCGCCTTCGTCGCCCTCCTCCTCGTCGTCTACTCCCTCGGCTGCTGCGCGCTC
CGGAACAACCGGCGGCACAAGTACTCGCTGGTTGGGAAATGA

Peptide Sequence

PEP ID

Os08t0260600-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:9784270:9786922:-1 gene:Os08g0260600 transcript:Os08t0260600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TETRASPANIN 11 description:Tetraspanin domain containing protein. (Os08t0260600-01)
Sequence

MAPRCSNAVFAAINVVTLLLGAAVLAAGIYYGAPHRGGGGVTECERFLRAPALALGGAIV
AVSLAGLAGACCRATPLLWAYLLLTGLLILAAACFGVFALVVTNAGAGRAVSGRGFREYH
LGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKSNQTLDEFVNSNLSPLQSGCCKPPT
ACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSWKKIAF
VNAAFVALLLVVYSLGCCALRNNRRHKYSLVGK

Transcript Sequence

Transcript ID

Os08t0260600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:9784270:9786922:-1 gene:Os08g0260600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TETRASPANIN 11 description:Tetraspanin domain containing protein. (Os08t0260600-01)
Sequence

ACGCACCCACCAATGGCGCCGCGGTGCAGCAACGCCGTCTTCGCGGCCATCAACGTCGTC
ACGCTCCTCCTGGGCGCCGCCGTCCTCGCCGCGGGGATCTACTACGGCGCCCCGCACCGC
GGCGGCGGCGGCGTCACCGAGTGCGAGCGGTTCCTCCGCGCGCCGGCGCTCGCCCTCGGC
GGCGCCATCGTGGCCGTGTCCCTGGCGGGGCTCGCCGGCGCGTGCTGCCGCGCGACGCCG
CTGCTGTGGGCCTACCTCCTCCTGACGGGCCTCCTCATCCTCGCCGCCGCCTGCTTCGGC
GTGTTCGCGCTCGTCGTCACCAACGCCGGCGCCGGGCGGGCCGTGTCCGGGAGAGGGTTC
AGGGAGTACCACCTCGGCGACTACTCGACGTGGCTCCGCCGGAGCGTGGAGGACGGCGGC
CACTGGGCGAGGATCAGGAGCTGCCTCGTCGACACCGGCGTGTGCCGGAGCTTGAAGAGC
AACCAGACGCTCGACGAATTCGTCAACTCCAACCTCTCGCCGCTGCAGTCTGGATGCTGC
AAGCCACCAACAGCATGCAACTTCACATACCAGAACGAGACATACTGGATCAAGCCTCCT
ACACCCAGCAACTACTCAGACCCTGACTGCAACTCTTGGTCGAATGACCAGTCTGAGCTC
TGCTACGGCTGCCAGTCCTGCAAGGCCGGTGTTCTTGGCAACCTGAGGAGCAGCTGGAAG
AAGATCGCCTTCGTCAACGCCGCCTTCGTCGCCCTCCTCCTCGTCGTCTACTCCCTCGGC
TGCTGCGCGCTCCGGAACAACCGGCGGCACAAGTACTCGCTGGTTGGGAAATGATGAGGG
TTTTTGGTTTTTGCTCAGATGAAGGTTTTGTGGCGTGTGTGTTTGTGTTGTGTTGCTTGC
TGGTTGGCTACATGAACAACTGTAGTATTTCAGGAAAAAGATTTATGCTTCAGTAAATAT
GCGCTTCCATGTTATGAATGATCGCTAGTTTAGTAAATATGTGTTGGTTGAGTTCTTGAT
TGAGATTTGAGAATCTCTCAGGAAAATATGGCTGGACCTTTTAATAGTTACTTTTGGGTT
TGGAACAGTC