Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0254300-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:9399521:9402233:1 gene:Os08g0254300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0112M24.2 protein. (Os08t0254300-00)
Sequence

AGATCGAAACAGAGAAAGACCGTGACCCATGGCGAGCGGCGGCGGCGGCGTGAGGCTGAA
GGCCGGGACGCGGCCGCCGTGGGTGGGGCTAGCGGCGGCGGTGTGGGTGCAGATGGCGGC
GGGGAACGCGTACACGTTCCCGCTCTACTCGCCGGCGATCAAGGCGGCGCTGGGGTACAC
GCAGCAGCAGCTCGCCGTGCTGGGCGTCGCCAAGGACGTCGGCGAGAACTTCGGCGTCGT
CGCCGGCGTGCTCTGCAACAGCTTCCCGCCCTGGGTGGTGCTGCTCGTCGGCGCGGCCTT
CTGCTTCGTCGGCTACGGCGCGCTCTGGCTCGCCGTCAGTGGCGCCGTCGTCGCCATGCC
GTACTGTTTGGTAAGCACTCATCTGATTCCAACCAGAATTCAATCTTTGGTATTTTCAAA
ACTTCCGTGCTGGTGACCAACATGCGCAACTTCCCGCTCCGCCGCGGCGTCGTCGCCGGC
CTCCTCAAGGGCTACATCGGCGTCAGCGCCGCCCTCTTCACCCAGGTCTTCTCCGGCGTG
CTCCACCGCTCGCCGACGAGCCTCCTCCTCCTCCTCGCCACCGGCCTCCCCACCATATGC
CTCGCCACCATGTACTTCGTCAGGCCCTGCACGCCGGCGACGCTCGACGCCGCCACAACC
GACGCCGACACCGAGGAAGACGGCCATTTCGCCTTCACCCAAGCCGTGAGCGTCGTCCTC
GCCGTCTACCTCGTGACAACCACCGTCCTCGGCAACGCCATCAAACTCTCCGATGCAACC
AGCTACACGCTTTTCATCGTCACCGTGCTTCTGCTTCTTGCGCCGCTCGCGATCCCGGTG
AAGATGACATTGTTCAGGAGTTCGCCGCGGCGGCGGAGTACAGAAACAACGGAGGAGCCA
TTGCTGATCCCGCCACATGTGGTCGTCGACAGCGGCGGCGATGGCGACGAGGAGGAATCT
GACAAGGTGGATTTGCTGCTAGCGGAAGGGAAGGGGGCGGTGGTGAGGAGGACGAAGAGG
CGGCGGCCGAGGAGAGGGGAGGACTTCGAGTTCAGTGAGGCGCTTGTCAAGGCTGATTTC
TGGCTGCTGTTCGTTGGATACTTCATTGGAGTTGGAACGGGTGTCACCGTGCTGAACAAT
CTGGCACAGATTGGTGTTGCTGCTGGTATTGGTGACACTACGGTTTTGTTGTCCCTGTTT
GCGCTTGGTAACTTCTTTGGCCGCCTTGGTGGAGGTGCAATTTCAGAGAAATTTGTCAGG
TCGACATTGTTGGTTCCTAGGCCAATATGGATGGCGTTGACGCAAACCGTCCTCGTCGTC
GCTTACCTCTGTTTGGCCTATACTCTCGGCCCAGCCGTCGCCTACGCTTGCACGGCCACC
GTTGGCCTTTGCTACGGCGTGCAATTCTCAGTGATGATTCCAACGACCTCAGAGCTGTTC
GGGCTCAAGAACTTCGGCCTCTTCTACAACCTCATGTCCCTGGCGAACCCGCTCGGCGCA
GCGCTCTTCTCCGGTGAGCTCACTGGTCGACTATACGACGAGGAGGCCGCGAGGCAACAA
CATTCTGGTGGTGTGTGCCTTGGCCCAGGATGCTTCAGGGCCGCGTTCGTGGTGCTCGCC
GGTGCCTGCTCGGTGGGGACGGCGGTGAGCTTGGTATTGGCGGCAAGGATACAGCCGGTT
TACATGGCTCTCTACTCTGGCGGGTCGTTCAGGTTGCCTAACGCGTCACAGCAACATTGA

Peptide Sequence

PEP ID

Os08t0254300-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:9399521:9402233:1 gene:Os08g0254300 transcript:Os08t0254300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0112M24.2 protein. (Os08t0254300-00)
Sequence

RSKQRKTVTHGERRRRREAEGRDAAAVGGASGGGVGADGGGERVHVPALLAGDQGGAGVH
AAAARRAGRRQGRRRELRRRRRRALQQLPALGGAARRRGLLLRRLRRALARRQWRRRRHA
VLFGKHSSDSNQNSIFGIFKTSVLVTNMRNFPLRRGVVAGLLKGYIGVSAALFTQVFSGV
LHRSPTSLLLLLATGLPTICLATMYFVRPCTPATLDAATTDADTEEDGHFAFTQAVSVVL
AVYLVTTTVLGNAIKLSDATSYTLFIVTVLLLLAPLAIPVKMTLFRSSPRRRSTETTEEP
LLIPPHVVVDSGGDGDEEESDKVDLLLAEGKGAVVRRTKRRRPRRGEDFEFSEALVKADF
WLLFVGYFIGVGTGVTVLNNLAQIGVAAGIGDTTVLLSLFALGNFFGRLGGGAISEKFVR
STLLVPRPIWMALTQTVLVVAYLCLAYTLGPAVAYACTATVGLCYGVQFSVMIPTTSELF
GLKNFGLFYNLMSLANPLGAALFSGELTGRLYDEEAARQQHSGGVCLGPGCFRAAFVVLA
GACSVGTAVSLVLAARIQPVYMALYSGGSFRLPNASQQH

Transcript Sequence

Transcript ID

Os08t0254300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:9399521:9402233:1 gene:Os08g0254300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0112M24.2 protein. (Os08t0254300-00)
Sequence

AGATCGAAACAGAGAAAGACCGTGACCCATGGCGAGCGGCGGCGGCGGCGTGAGGCTGAA
GGCCGGGACGCGGCCGCCGTGGGTGGGGCTAGCGGCGGCGGTGTGGGTGCAGATGGCGGC
GGGGAACGCGTACACGTTCCCGCTCTACTCGCCGGCGATCAAGGCGGCGCTGGGGTACAC
GCAGCAGCAGCTCGCCGTGCTGGGCGTCGCCAAGGACGTCGGCGAGAACTTCGGCGTCGT
CGCCGGCGTGCTCTGCAACAGCTTCCCGCCCTGGGTGGTGCTGCTCGTCGGCGCGGCCTT
CTGCTTCGTCGGCTACGGCGCGCTCTGGCTCGCCGTCAGTGGCGCCGTCGTCGCCATGCC
GTACTGTTTGGTAAGCACTCATCTGATTCCAACCAGAATTCAATCTTTGGTATTTTCAAA
ACTTCCGTGCTGGTGACCAACATGCGCAACTTCCCGCTCCGCCGCGGCGTCGTCGCCGGC
CTCCTCAAGGGCTACATCGGCGTCAGCGCCGCCCTCTTCACCCAGGTCTTCTCCGGCGTG
CTCCACCGCTCGCCGACGAGCCTCCTCCTCCTCCTCGCCACCGGCCTCCCCACCATATGC
CTCGCCACCATGTACTTCGTCAGGCCCTGCACGCCGGCGACGCTCGACGCCGCCACAACC
GACGCCGACACCGAGGAAGACGGCCATTTCGCCTTCACCCAAGCCGTGAGCGTCGTCCTC
GCCGTCTACCTCGTGACAACCACCGTCCTCGGCAACGCCATCAAACTCTCCGATGCAACC
AGCTACACGCTTTTCATCGTCACCGTGCTTCTGCTTCTTGCGCCGCTCGCGATCCCGGTG
AAGATGACATTGTTCAGGAGTTCGCCGCGGCGGCGGAGTACAGAAACAACGGAGGAGCCA
TTGCTGATCCCGCCACATGTGGTCGTCGACAGCGGCGGCGATGGCGACGAGGAGGAATCT
GACAAGGTGGATTTGCTGCTAGCGGAAGGGAAGGGGGCGGTGGTGAGGAGGACGAAGAGG
CGGCGGCCGAGGAGAGGGGAGGACTTCGAGTTCAGTGAGGCGCTTGTCAAGGCTGATTTC
TGGCTGCTGTTCGTTGGATACTTCATTGGAGTTGGAACGGGTGTCACCGTGCTGAACAAT
CTGGCACAGATTGGTGTTGCTGCTGGTATTGGTGACACTACGGTTTTGTTGTCCCTGTTT
GCGCTTGGTAACTTCTTTGGCCGCCTTGGTGGAGGTGCAATTTCAGAGAAATTTGTCAGG
TCGACATTGTTGGTTCCTAGGCCAATATGGATGGCGTTGACGCAAACCGTCCTCGTCGTC
GCTTACCTCTGTTTGGCCTATACTCTCGGCCCAGCCGTCGCCTACGCTTGCACGGCCACC
GTTGGCCTTTGCTACGGCGTGCAATTCTCAGTGATGATTCCAACGACCTCAGAGCTGTTC
GGGCTCAAGAACTTCGGCCTCTTCTACAACCTCATGTCCCTGGCGAACCCGCTCGGCGCA
GCGCTCTTCTCCGGTGAGCTCACTGGTCGACTATACGACGAGGAGGCCGCGAGGCAACAA
CATTCTGGTGGTGTGTGCCTTGGCCCAGGATGCTTCAGGGCCGCGTTCGTGGTGCTCGCC
GGTGCCTGCTCGGTGGGGACGGCGGTGAGCTTGGTATTGGCGGCAAGGATACAGCCGGTT
TACATGGCTCTCTACTCTGGCGGGTCGTTCAGGTTGCCTAACGCGTCACAGCAACATTGA