Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0245200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:8874179:8878862:1 gene:Os08g0245200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 1 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis (Os08t0245200-01)
Sequence	ATGGGGTCCATGGAGCAGCAGCAGCCGGAGTCGGCGGCGCCGGCGACGGAGGCGTCGCCG GAGATCATCTTCCGGTCGAAGCTGCAAGACATCGCCATCACCAACACCCTCCCGCTCCAC CGCTACTGCTTCGAGCGGCTCCCGGAGGTGGCGGCGCGCCCATGCCTCATCGACGGAGCC ACCGGCGGCGTGCTCACCTACGCCGACGTCGACCGCCTGTCCCGCCGCCTCGCCGCCGCG CTCCGCCGCGCGCCGCTGGGGCTCCGGCGGGGCGGCGTCGTGATGAGCCTGCTGCGGAAC TCGCCGGAGTTCGTGCTGTCCTTCTTCGCCGCGTCGCGCGTCGGCGCCGCGGTGACCACG GCGAACCCAATGTCCACCCCGCACGAGATCGAGAGCCAGCTCGCCGCCGCCGGCGCCACC GTCGTCATCACCGAGTCCATGGCCGCCGACAAGCTCCCCTCCCACTCCCACGGCGCCCTC ACCGTCGTCCTCATCGACGAGCGCCGCGACGGCTGCCTCCACTTCTGGGACGACCTCATG TCGGAGGACGAAGCGTCGCCGCTCGCCGGCGACGAGGACGACGAGAAGGTGTTCGACCCG GACGACGTGGTGGCGCTGCCGTACTCGTCGGGGACGACGGGTCTCCCCAAGGGGGTGATG CTAACGCACCGGAGCCTGAGCACGAGCGTGGCGCAGCAGGTCGACGGCGAGAACCCAAAC ATCGGGCTCCACGCCGGCGACGTGATCCTGTGCGCGCTGCCCATGTTCCACATCTACTCG CTCAACACCATCATGATGTGCGGCCTCCGCGTCGGCGCCGCCATCGTCGTCATGCGCCGC TTCGACCTCGCCGCCATGATGGACCTCGTCGAGCGCCACCGCGTCACCATCGCGCCGCTC GTGCCGCCCATCGTCGTGGCCGTGGCCAAGAGCGAGGCGGCGGCGGCGCGAGACCTCTCG TCGGTGCGGATGGTGCTCTCCGGCGCGGCGCCCATGGGCAAGGACATCGAGGACGCGTTC ATGGCCAAGCTCCCCGGCGCCGTGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCA GTGCTGTCAATGTGCCTAGCATTCGCCAAGGAGCCCTTCAAGGTGAAGTCCGGTGCGTGC GGGACGGTGGTGCGCAACGCCGAGCTGAAGATCATCGACCCCGACACCGGGAAGTCGCTT GGCCGGAACCTGCCCGGCGAGATCTGCATCAGGGGGCAACAGATCATGAAAGGTTACCTG AACAACCCAGAGGCCACGAAGAACACCATTGATGCAGAAGGGTGGCTGCACACCGGCGAC ATCGGCTACGTCGACGACGACGACGAGATCTTCATCGTGGATAGGCTCAAGGAGATCATC AAATACAGGGGCTTCCAGGTAGCCCCTGCAGAGCTGGAGGCCCTTCTCATCACCCATCCA AGCATTGCTGATGCTGCTGTTGTTGGGAAACAAATTGAGCCTGAAATCGGAGAAATACCA GTCGCCTTCGTGGCGAAAACCGAAGGGAGTGAGCTGAGTGAAGATGATGTCAAACAATTC GTAGCAAAGGAGGTGATCTACTACAAGAAGATCCGGGAGGTCTTCTTCGTTGACAAAATC CCCAAGGCGCCGTCAGGGAAGATCCTGAGAAAGGAACTGAGGAAGCAGCTGCAACATCTT CAACAAGAAGCTTAA

Peptide Sequence

PEP ID	Os08t0245200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:8874179:8878862:1 gene:Os08g0245200 transcript:Os08t0245200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 1 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis (Os08t0245200-01)
Sequence	MGSMEQQQPESAAPATEASPEIIFRSKLQDIAITNTLPLHRYCFERLPEVAARPCLIDGA TGGVLTYADVDRLSRRLAAALRRAPLGLRRGGVVMSLLRNSPEFVLSFFAASRVGAAVTT ANPMSTPHEIESQLAAAGATVVITESMAADKLPSHSHGALTVVLIDERRDGCLHFWDDLM SEDEASPLAGDEDDEKVFDPDDVVALPYSSGTTGLPKGVMLTHRSLSTSVAQQVDGENPN IGLHAGDVILCALPMFHIYSLNTIMMCGLRVGAAIVVMRRFDLAAMMDLVERHRVTIAPL VPPIVVAVAKSEAAAARDLSSVRMVLSGAAPMGKDIEDAFMAKLPGAVLGQGYGMTEAGP VLSMCLAFAKEPFKVKSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRGQQIMKGYL NNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHP SIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKI PKAPSGKILRKELRKQLQHLQQEA

Transcript Sequence

Transcript ID	Os08t0245200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:8874179:8878862:1 gene:Os08g0245200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 1 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis (Os08t0245200-01)
Sequence	AGAAGCCCAAAACACACGAAGCAAAGCTGCCTCGTCTGTGTCACTGACAGATGGGGTCCA TGGAGCAGCAGCAGCCGGAGTCGGCGGCGCCGGCGACGGAGGCGTCGCCGGAGATCATCT TCCGGTCGAAGCTGCAAGACATCGCCATCACCAACACCCTCCCGCTCCACCGCTACTGCT TCGAGCGGCTCCCGGAGGTGGCGGCGCGCCCATGCCTCATCGACGGAGCCACCGGCGGCG TGCTCACCTACGCCGACGTCGACCGCCTGTCCCGCCGCCTCGCCGCCGCGCTCCGCCGCG CGCCGCTGGGGCTCCGGCGGGGCGGCGTCGTGATGAGCCTGCTGCGGAACTCGCCGGAGT TCGTGCTGTCCTTCTTCGCCGCGTCGCGCGTCGGCGCCGCGGTGACCACGGCGAACCCAA TGTCCACCCCGCACGAGATCGAGAGCCAGCTCGCCGCCGCCGGCGCCACCGTCGTCATCA CCGAGTCCATGGCCGCCGACAAGCTCCCCTCCCACTCCCACGGCGCCCTCACCGTCGTCC TCATCGACGAGCGCCGCGACGGCTGCCTCCACTTCTGGGACGACCTCATGTCGGAGGACG AAGCGTCGCCGCTCGCCGGCGACGAGGACGACGAGAAGGTGTTCGACCCGGACGACGTGG TGGCGCTGCCGTACTCGTCGGGGACGACGGGTCTCCCCAAGGGGGTGATGCTAACGCACC GGAGCCTGAGCACGAGCGTGGCGCAGCAGGTCGACGGCGAGAACCCAAACATCGGGCTCC ACGCCGGCGACGTGATCCTGTGCGCGCTGCCCATGTTCCACATCTACTCGCTCAACACCA TCATGATGTGCGGCCTCCGCGTCGGCGCCGCCATCGTCGTCATGCGCCGCTTCGACCTCG CCGCCATGATGGACCTCGTCGAGCGCCACCGCGTCACCATCGCGCCGCTCGTGCCGCCCA TCGTCGTGGCCGTGGCCAAGAGCGAGGCGGCGGCGGCGCGAGACCTCTCGTCGGTGCGGA TGGTGCTCTCCGGCGCGGCGCCCATGGGCAAGGACATCGAGGACGCGTTCATGGCCAAGC TCCCCGGCGCCGTGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTGTCAA TGTGCCTAGCATTCGCCAAGGAGCCCTTCAAGGTGAAGTCCGGTGCGTGCGGGACGGTGG TGCGCAACGCCGAGCTGAAGATCATCGACCCCGACACCGGGAAGTCGCTTGGCCGGAACC TGCCCGGCGAGATCTGCATCAGGGGGCAACAGATCATGAAAGGTTACCTGAACAACCCAG AGGCCACGAAGAACACCATTGATGCAGAAGGGTGGCTGCACACCGGCGACATCGGCTACG TCGACGACGACGACGAGATCTTCATCGTGGATAGGCTCAAGGAGATCATCAAATACAGGG GCTTCCAGGTAGCCCCTGCAGAGCTGGAGGCCCTTCTCATCACCCATCCAAGCATTGCTG ATGCTGCTGTTGTTGGGAAACAAATTGAGCCTGAAATCGGAGAAATACCAGTCGCCTTCG TGGCGAAAACCGAAGGGAGTGAGCTGAGTGAAGATGATGTCAAACAATTCGTAGCAAAGG AGGTGATCTACTACAAGAAGATCCGGGAGGTCTTCTTCGTTGACAAAATCCCCAAGGCGC CGTCAGGGAAGATCCTGAGAAAGGAACTGAGGAAGCAGCTGCAACATCTTCAACAAGAAG CTTAATTTACAACCGGCCTCAGACATGAAAAGAATTTAGCATGAACAAGCAAGTTCCATG ATTCTAATGTTGCAAATTACACATTCTGTTCTGAATAGTTTGTGTCTTCCATTTATATGT GATGGGGGAAAAAAACCCAGGTACAAATGGATTCTGTGCAATACAAAGGGTGGTGTTACC GTGTTAGGTCGGCTAGGTTTGCTCATTTGCAGAGAGACAGGACACTGGGGAAGCCATGTA CAAAAATGTTCAGACCTGTTTATTGTTCTTGCTGGTGTCTTTGTAATATTTTGTTTAAAC ATTTATATCATTCATTATTATTGTT