Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0242800-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:8678003:8681453:1 gene:Os08g0242800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 6 description:Similar to Sigma factor SIG6. (Os08t0242800-01);Similar to Sigma factor SIG6. (Os08t0242800-02)
Sequence	ATGAATTCCGGCGGCCGGAGCCTCCTCTCGTCCCCGCTCTTCGCCAGCTCTTCCCCGGCC TTCCGCGGCGGCGCCGCCGCCGCCTCCTGCTCCTCGTCTTCCTCCCCGTCCTCCTCCTCC CGCGCCACTGTGGTGCCCATGGTGCACGACACCGGCGGCGGGCGAGCGTCGTCGACGGCG TGCCACTACTCGCCGTCGCTGGTGGCGGCGGAGCCGGAGGAGCACGTCCACGGCCGCTCC AAGGACGACGACGACGACGCCGCCGTGTCGCTCATGGGCGAGAAGGCCTTGCTGGAGCTG CTCCTCGACATGGCTTTGGAACAACACGCACCAGGGAAGAAGCTACCAGCTGAAGAGAGG GAAGAGAGTGAGTTCGACATCTATCTGAGAGATGATAAAAGCCATGTCCTTTACCATCCA GAATTCAGCTCTACATCTGTGAGTTCTTCACCATTGTCCGTAAAATCTAGCGAAAGATCG GATCTTGGTACAGCTTCAGCGGTTCTGACGAAGGACGTGGCATTATTAGCAGAAGAAACA GACATTTTAGCAACCCAACTGAAAGCATCGCAACTTTACAGTGTGGATTCGAGCAAGTCA AATGAAGAACTGCAGAGCAAGGGTCAGGTGTTCGTTAGATCGACGAGGTTACTCGAGAGG AGATCCAAGCGGCGTTATGCTCCTCGAGCATCGATCGCTGATGTTTCCTGCAGCGCTGAC AATTCGAAGAAGAAAGAGAAATCAAAGAAGTATGGCAGAGTTCTTGAACCAGATGAGCCT TTCAAGCTGTTCCTAAGAGATCGGGAGACGACGGAATTCCTGACAGCAAAAGAGGAGAGA CATTTGTTCAGTAAAATACAGATTCTTATGAAAATAGAGGAGGCTCACCGGAAACTAGAA GTTCAATGCGGCCGTGAGCCGACATTGGCAGAGTGGGCTGAGGCTGTAGGGATGAGCAGC AAGGAGCTGCAGTCCTCTATTCGCACCGGAAGACGGTGCCGGGAGAAGATGGCTCGATCG AACTTCAGGCTTGTGATTCATGTAGCTAGGAAGTATGAAGGATATGGTCTTGACATCCAG GACCTTGTTCAGGATGGATGCAGTGGGTTGATGAAGACCTTTGAGAAGTTCAATCCCAGC AAGGGGTGTCGATTCCCGACCTACGCATATTGGTGGATACGCCAATCAATTAAGAAGTCA ATCTTCAAGAACTCAAGACTAATCCGGTTACCGGAGAGTGTGTATGCGCTTCTGAGAAAG GTGGGCAAGGCAAGGATGGAATGCATCATGGAAGGGGAGCAACCCACCAACGCGAACGTA GCGAGGCGCGCCGGCATCACCATCGAGAAGCTTGCGAAGCTCCGAGCGAAAACCCGGAAA CCCCGGTCGATGCAGGATCATGTCTGGTCAGATGAGGGTGTCACCTTCCAGGAGATCACA GAAGACCCAAATGTGGAGCCACCTGACCTGAGTGTGGACAGGATGATGATGAGGCAGCAG GTGAGGGACTTCCTGGGGATCCTGAGCCCCAGGGAGAAGGAGATCATCGAGCACCGGTTC GGGATCCACGATGGCGAGCCGAAGACGCTACATGTCATCGGGGACATGTTTGGGCTGTCC AAGGAGAGGATCAGGCAGCTGCAGAACCGGGCGCTGGAGAAGCTCAAGAGGAGTGCATCC TTGCAGGGGTTTGATGTCTACTTTGATTTGCTAACCTGA

Peptide Sequence

PEP ID	Os08t0242800-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:8678003:8681453:1 gene:Os08g0242800 transcript:Os08t0242800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 6 description:Similar to Sigma factor SIG6. (Os08t0242800-01);Similar to Sigma factor SIG6. (Os08t0242800-02)
Sequence	MNSGGRSLLSSPLFASSSPAFRGGAAAASCSSSSSPSSSSRATVVPMVHDTGGGRASSTA CHYSPSLVAAEPEEHVHGRSKDDDDDAAVSLMGEKALLELLLDMALEQHAPGKKLPAEER EESEFDIYLRDDKSHVLYHPEFSSTSVSSSPLSVKSSERSDLGTASAVLTKDVALLAEET DILATQLKASQLYSVDSSKSNEELQSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSAD NSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLE VQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQ DLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRK VGKARMECIMEGEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEIT EDPNVEPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLS KERIRQLQNRALEKLKRSASLQGFDVYFDLLT

Transcript Sequence

Transcript ID	Os08t0242800-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:8678003:8681453:1 gene:Os08g0242800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 6 description:Similar to Sigma factor SIG6. (Os08t0242800-01);Similar to Sigma factor SIG6. (Os08t0242800-02)
Sequence	GGTGGGGTAGTGAAAAAAATCATCGCGCGCGCGACGAAGCAGCAGCGACGTCTCGGTGAG TGACGGTGAGCTCGATCCATCCATTCAAGAACGTACGTAGGTGCGGCGGCGGAGGCGGCG GAGCTGATGAATTCCGGCGGCCGGAGCCTCCTCTCGTCCCCGCTCTTCGCCAGCTCTTCC CCGGCCTTCCGCGGCGGCGCCGCCGCCGCCTCCTGCTCCTCGTCTTCCTCCCCGTCCTCC TCCTCCCGCGCCACTGTGGTGCCCATGGTGCACGACACCGGCGGCGGGCGAGCGTCGTCG ACGGCGTGCCACTACTCGCCGTCGCTGGTGGCGGCGGAGCCGGAGGAGCACGTCCACGGC CGCTCCAAGGACGACGACGACGACGCCGCCGTGTCGCTCATGGGCGAGAAGGCCTTGCTG GAGCTGCTCCTCGACATGGCTTTGGAACAACACGCACCAGGGAAGAAGCTACCAGCTGAA GAGAGGGAAGAGAGTGAGTTCGACATCTATCTGAGAGATGATAAAAGCCATGTCCTTTAC CATCCAGAATTCAGCTCTACATCTGTGAGTTCTTCACCATTGTCCGTAAAATCTAGCGAA AGATCGGATCTTGGTACAGCTTCAGCGGTTCTGACGAAGGACGTGGCATTATTAGCAGAA GAAACAGACATTTTAGCAACCCAACTGAAAGCATCGCAACTTTACAGTGTGGATTCGAGC AAGTCAAATGAAGAACTGCAGAGCAAGGGTCAGGTGTTCGTTAGATCGACGAGGTTACTC GAGAGGAGATCCAAGCGGCGTTATGCTCCTCGAGCATCGATCGCTGATGTTTCCTGCAGC GCTGACAATTCGAAGAAGAAAGAGAAATCAAAGAAGTATGGCAGAGTTCTTGAACCAGAT GAGCCTTTCAAGCTGTTCCTAAGAGATCGGGAGACGACGGAATTCCTGACAGCAAAAGAG GAGAGACATTTGTTCAGTAAAATACAGATTCTTATGAAAATAGAGGAGGCTCACCGGAAA CTAGAAGTTCAATGCGGCCGTGAGCCGACATTGGCAGAGTGGGCTGAGGCTGTAGGGATG AGCAGCAAGGAGCTGCAGTCCTCTATTCGCACCGGAAGACGGTGCCGGGAGAAGATGGCT CGATCGAACTTCAGGCTTGTGATTCATGTAGCTAGGAAGTATGAAGGATATGGTCTTGAC ATCCAGGACCTTGTTCAGGATGGATGCAGTGGGTTGATGAAGACCTTTGAGAAGTTCAAT CCCAGCAAGGGGTGTCGATTCCCGACCTACGCATATTGGTGGATACGCCAATCAATTAAG AAGTCAATCTTCAAGAACTCAAGACTAATCCGGTTACCGGAGAGTGTGTATGCGCTTCTG AGAAAGGTGGGCAAGGCAAGGATGGAATGCATCATGGAAGGGGAGCAACCCACCAACGCG AACGTAGCGAGGCGCGCCGGCATCACCATCGAGAAGCTTGCGAAGCTCCGAGCGAAAACC CGGAAACCCCGGTCGATGCAGGATCATGTCTGGTCAGATGAGGGTGTCACCTTCCAGGAG ATCACAGAAGACCCAAATGTGGAGCCACCTGACCTGAGTGTGGACAGGATGATGATGAGG CAGCAGGTGAGGGACTTCCTGGGGATCCTGAGCCCCAGGGAGAAGGAGATCATCGAGCAC CGGTTCGGGATCCACGATGGCGAGCCGAAGACGCTACATGTCATCGGGGACATGTTTGGG CTGTCCAAGGAGAGGATCAGGCAGCTGCAGAACCGGGCGCTGGAGAAGCTCAAGAGGAGT GCATCCTTGCAGGGGTTTGATGTCTACTTTGATTTGCTAACCTGAAGAAGAAAGGCCAAG CAGCTCATTTGGTTTCAGAAACTTTCAGTCAAGTTGTCCATACAAAACAGCAGAAACACA TACACACTGTAGCTTTCTAGACCTATTATACATATATACTACACACCCAGTGACACGTAC TGTACAAGTATAGTGCTAGATCTGCAGAAAGAAATGTGGTACACGGATTCAGAGTTTCAG ATGGCATCCTTTTTTGCTTATGTAAGTAAATTTCCCAGCAAGCTGCTGTTGGTGCTTATA CTGATACTGCAAGTCTGCAATGCAAAGCAACCCTCATTGTAATTAAGGATAATCATGTAC ATTTTTTTACCCTTAATTTGAGCTGATCAGGCGCTGTAATT