Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0240800-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:8508463:8518590:1 gene:Os08g0240800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN5, VILLIN 5 description:Similar to Actin filament bundling protein P-115-ABP. (Os08t0240800-01)
Sequence	ATGTCGGTTTCTATGAAGGATTTGGATCCAGCTTTTCGTGGTGCTGGGCAAAAGGAAGGC TTGGAAATATGGCGCATCGAGAACTTCAAGCCAGTTCCTATTCCTGCGTCTTCATATGGA AAATTTTTCATGGGTGATTCTTACATCATCTTGAAGACAACTGCCTTGAAAAATGGTTCT CTTCGACATGACATTCATTACTGGATTGGCAAAGATACTAGTCAGGATGAATCTGGAACT GCAGCAATTTTAACAGTTGAGCTTGATGCTGCACTTGGTGGACGCGCTGTTCAATACCGA GAGATACAAGGCAATGAAACAGATAAGTTCCTCTCATATTTTAGACCATGCATCATGCCA CAGCCAGGAGGAGTGGCATCTGGGTTCAAGCATGTTGAGGTCAATGAGCAGGAGCACGAA ACCCGTCTGTATGTCTGTACAGGGAATCGTGTTGTTCATGTCAAAGAGGTTCCTTTTGCT CGATCGTCCCTGAATCATGATGACATATTTATTCTGGACACGAAGTCCAAAATTTTCCAG TTCAATGGCTCCAATTCGTCTATTCAAGAGCGTGCAAAGGCTCTTGAAGTCGTGCAGTAC ATCAAAGATACATTTCACGAGGGCAAGTGTGAAGTTGCAGCTGTTGAGGATGGCAGGTTG ATGGCCGATGCTGAAGCTGGTGAATTTTGGGGTTTTTTTGGTGGCTTTGCCCCTCTACCA AGGAGAGCCCCTGTAGAAGATAATGAGAAATATGAAGAAACTGTTTTCAAATTGCTCTGT TTTAACCAAGGAAAGTTGGAGCCTATCAATTATGAATCCTTATTGCACGAGTTGCTCAAG ACAAATAAGTGTTACTTGTTAGATTGTGGTGTCGAATTATTTGTTTGGATGGGCAGAACC ACATCTTTGCAGGAGAGGAAGAGTGCCAGTGAAGCTGCTGAGAAATTGCTCTCTGATGAT AACCGAACAAAAACACATGTAATCAAAGTAATTGAGGGGTTTGAGACAGTTATGTTCAAG TCAAAATTTAAAGAGTGGCCACAGACACCTGACTTGAAATTGTCATCTGAGGATGGAAGA GGAAAAGTTGCAGCTCTTCTGAAACGCCAGGGCTTAAATGTTAAGGGCCTGATGAAAGCT GCTCCTGCAAAAGAAGAACCCCAAGCTTACATTGATTGCACTGGCAGTTTGCAGGTCTGG CGCATAAATGATAAGGACAAGATACTTCTGCCATCTGCTGACCAATCAAAATTTTACACT GGCGATTGCTACATATTTCAATATATGTACCCTGGAGATGACAAGGAGGAGTGTCTTATT GGAAGTTGGTTTGGGAAGAAGAGCATTGAGGAGGATAGGGTAACTGCTATTTCACTTGCA AGCAAGATGGTTGAGTCTGCGAAATTTCAGGCTGTCCAGACACGACTATATGAGGGAAAA GAACCAATTCAATTCTTCGTCATATTTCAAAGCTTCCAAGTGTTTAAGGGTGGTCTAAGC TCTGGATACAAGAAATTTATTGCTGAAAATGGTATTGATGATGACACTTATTTGGAAGAT GGACTTGCGCTCTTCCGAATTCAAGGTTCAGGACCAGAAAACATGCAGGCAATTCAAGTT GATGCTGCGGCATCGTCTTTGAATTCATCCTATTCGTACATCCTACATGATGGAAATACT GTATTCACTTGGACTGGAAACCTTACTACGTCATTAGATCAAGAGGTAGTTGAGAGGCAG CTAGACATAATTAAGCCAAATTCGCAGTCCAGATCGCAGAAAGAAGGGTCAGAAACAGAT CAATTTTGGAGCTTACTTGGAGGCAAATCTGAGTATCCAAGTCAAAAGATAGGAAGGGCA AATGAAAGTGATCCCCATCTTTTCTCATGTATCCTACCCAAAGGCAATTTAAAGATCAAA GAAATATACCACTTCACTCAAGATGATCTGATGACAGAAGATGTATTCATTCTGGACTGT CACTCAGATATATTTGTTTGGGTTGGCCAGCAGGTAGATGTCAAAGTGCGATTACAAGCT CTGGACATTGGTGAGAAATTCGTTAAGCTTGATTTCCTGATGGAAAATCTATCCAGCGAC ACACCAATTTTTGTTATCATGGAAGGAAGTGAGCCTACATTTTTCACAAGGTTCTTCACT TGGGACTCAGCAAAGTCACTTATGCATGGCAATTCATACCAGAGGAAGCTTTCCATTGTA AAGGGTGGAGGTTCTCCTGCTTTGGATAAACCAAAGCGACGAACACCAACATATTCAGGG AGAAGCACTGTACAAGACAAATCTCAGCGCTCGAGGAGTATGTCTTTCAGCCCTGAACGT GTCCGTGTTAGGGGAAGATCTCCGGCATTCACTGCATTGGCTGCTAACTTTGAAAGTGCA AACAGCAGAAATCTTTCCACCCCTCCACCCGTAGTTAAAAAACTTTACCCAAAATCTGCC ACACCTGACTCATCAAGTGCACCGTCTAAGTCATCTGCAACTGCTTCTCTCACTGGTTCT TTTGATCGCCCTAAATCAGTAAAAGATGGATCTGAGTTGGAGAAGCCAAAGCAAGAGGAA GATGCAAAAGAAGGCATTAACACCATGACCAGTAGAGTTGAATCTCTCACTATTAATGAA GATGTAAAAGAAAATGAACCAGAAGATGACGAGGGGCTCCCAGTATACCCATATGATCGC CTGATAACTACAGCTGCTGATCCTGTCACTGAAATTGACGTTACCAGGCGAGAGACCTAC TTATCTTCGGCTGAATTCAAAGACAAGTTTGGAATGACAAAGGAAGCATTCAGCAAGCTT CCAAAGTGGAAGCAAAATAGAATGAAGATCGCTCTCCAACTTTTTTAG

Peptide Sequence

PEP ID	Os08t0240800-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:8508463:8518590:1 gene:Os08g0240800 transcript:Os08t0240800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN5, VILLIN 5 description:Similar to Actin filament bundling protein P-115-ABP. (Os08t0240800-01)
Sequence	MSVSMKDLDPAFRGAGQKEGLEIWRIENFKPVPIPASSYGKFFMGDSYIILKTTALKNGS LRHDIHYWIGKDTSQDESGTAAILTVELDAALGGRAVQYREIQGNETDKFLSYFRPCIMP QPGGVASGFKHVEVNEQEHETRLYVCTGNRVVHVKEVPFARSSLNHDDIFILDTKSKIFQ FNGSNSSIQERAKALEVVQYIKDTFHEGKCEVAAVEDGRLMADAEAGEFWGFFGGFAPLP RRAPVEDNEKYEETVFKLLCFNQGKLEPINYESLLHELLKTNKCYLLDCGVELFVWMGRT TSLQERKSASEAAEKLLSDDNRTKTHVIKVIEGFETVMFKSKFKEWPQTPDLKLSSEDGR GKVAALLKRQGLNVKGLMKAAPAKEEPQAYIDCTGSLQVWRINDKDKILLPSADQSKFYT GDCYIFQYMYPGDDKEECLIGSWFGKKSIEEDRVTAISLASKMVESAKFQAVQTRLYEGK EPIQFFVIFQSFQVFKGGLSSGYKKFIAENGIDDDTYLEDGLALFRIQGSGPENMQAIQV DAAASSLNSSYSYILHDGNTVFTWTGNLTTSLDQEVVERQLDIIKPNSQSRSQKEGSETD QFWSLLGGKSEYPSQKIGRANESDPHLFSCILPKGNLKIKEIYHFTQDDLMTEDVFILDC HSDIFVWVGQQVDVKVRLQALDIGEKFVKLDFLMENLSSDTPIFVIMEGSEPTFFTRFFT WDSAKSLMHGNSYQRKLSIVKGGGSPALDKPKRRTPTYSGRSTVQDKSQRSRSMSFSPER VRVRGRSPAFTALAANFESANSRNLSTPPPVVKKLYPKSATPDSSSAPSKSSATASLTGS FDRPKSVKDGSELEKPKQEEDAKEGINTMTSRVESLTINEDVKENEPEDDEGLPVYPYDR LITTAADPVTEIDVTRRETYLSSAEFKDKFGMTKEAFSKLPKWKQNRMKIALQLF

Transcript Sequence

Transcript ID	Os08t0240800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:8508463:8518590:1 gene:Os08g0240800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN5, VILLIN 5 description:Similar to Actin filament bundling protein P-115-ABP. (Os08t0240800-01)
Sequence	TCTGCCCGCTTTGCCTCTTTTTCCCTTTCCTTTCTCTCTCGAGCCTTCCTCTTCCTCTTC CTCTTCCTCCTCTACTCCACCTCCCCTCTCGCCGCTCCAGATCGATTCCCCCCCCCACCT CGCCCGCGCGAATTCCCCGCTCCGATCTCCGCCGCCTCCCTCCCAGCATACTATTAGCTC TCCTGTGAAAGAGAAGAATTGAGAGGTTTCTTTAACATCAAGGATGTCGGTTTCTATGAA GGATTTGGATCCAGCTTTTCGTGGTGCTGGGCAAAAGGAAGGCTTGGAAATATGGCGCAT CGAGAACTTCAAGCCAGTTCCTATTCCTGCGTCTTCATATGGAAAATTTTTCATGGGTGA TTCTTACATCATCTTGAAGACAACTGCCTTGAAAAATGGTTCTCTTCGACATGACATTCA TTACTGGATTGGCAAAGATACTAGTCAGGATGAATCTGGAACTGCAGCAATTTTAACAGT TGAGCTTGATGCTGCACTTGGTGGACGCGCTGTTCAATACCGAGAGATACAAGGCAATGA AACAGATAAGTTCCTCTCATATTTTAGACCATGCATCATGCCACAGCCAGGAGGAGTGGC ATCTGGGTTCAAGCATGTTGAGGTCAATGAGCAGGAGCACGAAACCCGTCTGTATGTCTG TACAGGGAATCGTGTTGTTCATGTCAAAGAGGTTCCTTTTGCTCGATCGTCCCTGAATCA TGATGACATATTTATTCTGGACACGAAGTCCAAAATTTTCCAGTTCAATGGCTCCAATTC GTCTATTCAAGAGCGTGCAAAGGCTCTTGAAGTCGTGCAGTACATCAAAGATACATTTCA CGAGGGCAAGTGTGAAGTTGCAGCTGTTGAGGATGGCAGGTTGATGGCCGATGCTGAAGC TGGTGAATTTTGGGGTTTTTTTGGTGGCTTTGCCCCTCTACCAAGGAGAGCCCCTGTAGA AGATAATGAGAAATATGAAGAAACTGTTTTCAAATTGCTCTGTTTTAACCAAGGAAAGTT GGAGCCTATCAATTATGAATCCTTATTGCACGAGTTGCTCAAGACAAATAAGTGTTACTT GTTAGATTGTGGTGTCGAATTATTTGTTTGGATGGGCAGAACCACATCTTTGCAGGAGAG GAAGAGTGCCAGTGAAGCTGCTGAGAAATTGCTCTCTGATGATAACCGAACAAAAACACA TGTAATCAAAGTAATTGAGGGGTTTGAGACAGTTATGTTCAAGTCAAAATTTAAAGAGTG GCCACAGACACCTGACTTGAAATTGTCATCTGAGGATGGAAGAGGAAAAGTTGCAGCTCT TCTGAAACGCCAGGGCTTAAATGTTAAGGGCCTGATGAAAGCTGCTCCTGCAAAAGAAGA ACCCCAAGCTTACATTGATTGCACTGGCAGTTTGCAGGTCTGGCGCATAAATGATAAGGA CAAGATACTTCTGCCATCTGCTGACCAATCAAAATTTTACACTGGCGATTGCTACATATT TCAATATATGTACCCTGGAGATGACAAGGAGGAGTGTCTTATTGGAAGTTGGTTTGGGAA GAAGAGCATTGAGGAGGATAGGGTAACTGCTATTTCACTTGCAAGCAAGATGGTTGAGTC TGCGAAATTTCAGGCTGTCCAGACACGACTATATGAGGGAAAAGAACCAATTCAATTCTT CGTCATATTTCAAAGCTTCCAAGTGTTTAAGGGTGGTCTAAGCTCTGGATACAAGAAATT TATTGCTGAAAATGGTATTGATGATGACACTTATTTGGAAGATGGACTTGCGCTCTTCCG AATTCAAGGTTCAGGACCAGAAAACATGCAGGCAATTCAAGTTGATGCTGCGGCATCGTC TTTGAATTCATCCTATTCGTACATCCTACATGATGGAAATACTGTATTCACTTGGACTGG AAACCTTACTACGTCATTAGATCAAGAGGTAGTTGAGAGGCAGCTAGACATAATTAAGCC AAATTCGCAGTCCAGATCGCAGAAAGAAGGGTCAGAAACAGATCAATTTTGGAGCTTACT TGGAGGCAAATCTGAGTATCCAAGTCAAAAGATAGGAAGGGCAAATGAAAGTGATCCCCA TCTTTTCTCATGTATCCTACCCAAAGGCAATTTAAAGATCAAAGAAATATACCACTTCAC TCAAGATGATCTGATGACAGAAGATGTATTCATTCTGGACTGTCACTCAGATATATTTGT TTGGGTTGGCCAGCAGGTAGATGTCAAAGTGCGATTACAAGCTCTGGACATTGGTGAGAA ATTCGTTAAGCTTGATTTCCTGATGGAAAATCTATCCAGCGACACACCAATTTTTGTTAT CATGGAAGGAAGTGAGCCTACATTTTTCACAAGGTTCTTCACTTGGGACTCAGCAAAGTC ACTTATGCATGGCAATTCATACCAGAGGAAGCTTTCCATTGTAAAGGGTGGAGGTTCTCC TGCTTTGGATAAACCAAAGCGACGAACACCAACATATTCAGGGAGAAGCACTGTACAAGA CAAATCTCAGCGCTCGAGGAGTATGTCTTTCAGCCCTGAACGTGTCCGTGTTAGGGGAAG ATCTCCGGCATTCACTGCATTGGCTGCTAACTTTGAAAGTGCAAACAGCAGAAATCTTTC CACCCCTCCACCCGTAGTTAAAAAACTTTACCCAAAATCTGCCACACCTGACTCATCAAG TGCACCGTCTAAGTCATCTGCAACTGCTTCTCTCACTGGTTCTTTTGATCGCCCTAAATC AGTAAAAGATGGATCTGAGTTGGAGAAGCCAAAGCAAGAGGAAGATGCAAAAGAAGGCAT TAACACCATGACCAGTAGAGTTGAATCTCTCACTATTAATGAAGATGTAAAAGAAAATGA ACCAGAAGATGACGAGGGGCTCCCAGTATACCCATATGATCGCCTGATAACTACAGCTGC TGATCCTGTCACTGAAATTGACGTTACCAGGCGAGAGACCTACTTATCTTCGGCTGAATT CAAAGACAAGTTTGGAATGACAAAGGAAGCATTCAGCAAGCTTCCAAAGTGGAAGCAAAA TAGAATGAAGATCGCTCTCCAACTTTTTTAGCTTGAATCATGCTTAAAATTTCCTCATTC AACCTCCAGCTAAAGCACTGTTTGATCGTACAAGTCAACTTGTATATGCCTGAATAGCCC TTGGCAGCCATGGTCGTTGTGCAATGTGTCTATTTTCACATTGTGTGGGATGAGTCCTCC ATTTTTCCTTAGTCTGAGTTTGCCTTTGCTAGTTTCGGCTTATTCTTTCGATTCATAGGT GTGCCCTCTTACCATCTCCCATTTTACCAAGCGTTCAGTACTGGTTCGAGGGTCACACAG GTTTGGTTTTGAGGCTTGCAGTTTTGTATTAATCTACCCTGGTGTGTCCTTTTTTATTTT TTTTTCTAATGGGCATGAGGGAACGAGAAGTATGTACAGCAGAGTGCCAACACTGTAAAA TCTCAGTAACATGTGATTATTTTGTTTTCGTGTGTAAACATCTGTTCATTTATCTG