Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0220400-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:7325157:7327754:-1 gene:Os08g0220400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 24 description:Pectin lyase fold/virulence factor domain containing protein. (Os08t0220400-01)
Sequence	ATGAAGCAGTACTACAAAGCAGCGCTGCTTCGCTACTGGGTAGTAGTCCCGTTCCTCCTG TGGCTGGTAGCCACGGAGGAGCAACTCGCCGCCGGCGCCGTGGCCGGGGCAGCTGCCGAG TCGTCGTCGACTTGGGGCGGCCAGGGCCAGCTGCAGCTGCCTCTCTGGGTGCGACCCGGA GACCGGCGCCTCCTGGGGATGTCTGTGGCCGGCATGGCGGTGGATGCCGTCGTGGCGGCC GACGGCACCGGCCAGTACACTACCATCAAGCAAGCCGTGAAGGCAGCAGAGGCGGACACG AGCGGGCGCCGGTACACAATCCATGTGAAAGCTGGCAAGTACGTCGAAGACGTTGAGATA TGGAGGCCTAATATTACCATGATAGGCGACGGGATCGGGCGTACCATAATCAGCGGCATG AAGAGCAAAAACAAGAATCGGGGGACGGCCTGTACGGGCACACTGAACGTGCAAAAGGAC GGGTTCATCGCGCGAGAGCTTACGGTGGAGAACACCGCGGGGCCGCAGGCAATGCAGGCG GCGGCGGTGGTGGTGAAGTCGGATCGCGCCGTCTTCTTCAGGTGCGAGATAACGGGTTAC CAGGACACGCTGCTGGCAGATGTTTACAGGCAGTTCTACAGGGAATGTGTTATCTCCGGG ACAATTGATTTCGTGTGGGGCGAGGCGACGGCCGTCTTCCAGATGTGCCACCTCCTGGTG CGTCGCCCGTTGGAGGGCTCCCACAACACCATCACCGCGCAAGGGCGCAACCACTCCGAG CCCGTCGTCGCACGCTCGGGTTTCGTATTTCAGGAGTGCAACGTGTCGACCAAGGAGGAC CTGAGGGGCGTGGACACCTACCTGGGCCGCCCCTGGCACCCGGACTCCCGCGTCATCTTC ATGTCGTCCTACTTGGACGGCAACGTGGTCAATCCCAAGGGATGGGTGGCGTGGCGCATC AACAACGCCACCGACGAGCGCTCCACCGCCAGCACCGTCTACTACGCGGAGTACAACAAC ACTGGGGCTGGGGCCAACGTCACCCAGCGTGTTAACTGGCATGGTTTCCACCTTCTTGCA CCACACGAGGTACGCAATTTCACCGTTGACAGCTTCATCGACGGTGGCAGTTGGCTGCCA GAGACCAACGTCCCGTACCATCTCGATCTCGATCTCGGTCTGTAA

Peptide Sequence

PEP ID	Os08t0220400-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:7325157:7327754:-1 gene:Os08g0220400 transcript:Os08t0220400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 24 description:Pectin lyase fold/virulence factor domain containing protein. (Os08t0220400-01)
Sequence	MKQYYKAALLRYWVVVPFLLWLVATEEQLAAGAVAGAAAESSSTWGGQGQLQLPLWVRPG DRRLLGMSVAGMAVDAVVAADGTGQYTTIKQAVKAAEADTSGRRYTIHVKAGKYVEDVEI WRPNITMIGDGIGRTIISGMKSKNKNRGTACTGTLNVQKDGFIARELTVENTAGPQAMQA AAVVVKSDRAVFFRCEITGYQDTLLADVYRQFYRECVISGTIDFVWGEATAVFQMCHLLV RRPLEGSHNTITAQGRNHSEPVVARSGFVFQECNVSTKEDLRGVDTYLGRPWHPDSRVIF MSSYLDGNVVNPKGWVAWRINNATDERSTASTVYYAEYNNTGAGANVTQRVNWHGFHLLA PHEVRNFTVDSFIDGGSWLPETNVPYHLDLDLGL

Transcript Sequence

Transcript ID	Os08t0220400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:7325157:7327754:-1 gene:Os08g0220400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 24 description:Pectin lyase fold/virulence factor domain containing protein. (Os08t0220400-01)
Sequence	GGCGCTGCAAGACAGACAGATACATCGATCGATCGATCAGAGCTTTTTCTATCATCATTA GCTAGCAAGATGAAGCAGTACTACAAAGCAGCGCTGCTTCGCTACTGGGTAGTAGTCCCG TTCCTCCTGTGGCTGGTAGCCACGGAGGAGCAACTCGCCGCCGGCGCCGTGGCCGGGGCA GCTGCCGAGTCGTCGTCGACTTGGGGCGGCCAGGGCCAGCTGCAGCTGCCTCTCTGGGTG CGACCCGGAGACCGGCGCCTCCTGGGGATGTCTGTGGCCGGCATGGCGGTGGATGCCGTC GTGGCGGCCGACGGCACCGGCCAGTACACTACCATCAAGCAAGCCGTGAAGGCAGCAGAG GCGGACACGAGCGGGCGCCGGTACACAATCCATGTGAAAGCTGGCAAGTACGTCGAAGAC GTTGAGATATGGAGGCCTAATATTACCATGATAGGCGACGGGATCGGGCGTACCATAATC AGCGGCATGAAGAGCAAAAACAAGAATCGGGGGACGGCCTGTACGGGCACACTGAACGTG CAAAAGGACGGGTTCATCGCGCGAGAGCTTACGGTGGAGAACACCGCGGGGCCGCAGGCA ATGCAGGCGGCGGCGGTGGTGGTGAAGTCGGATCGCGCCGTCTTCTTCAGGTGCGAGATA ACGGGTTACCAGGACACGCTGCTGGCAGATGTTTACAGGCAGTTCTACAGGGAATGTGTT ATCTCCGGGACAATTGATTTCGTGTGGGGCGAGGCGACGGCCGTCTTCCAGATGTGCCAC CTCCTGGTGCGTCGCCCGTTGGAGGGCTCCCACAACACCATCACCGCGCAAGGGCGCAAC CACTCCGAGCCCGTCGTCGCACGCTCGGGTTTCGTATTTCAGGAGTGCAACGTGTCGACC AAGGAGGACCTGAGGGGCGTGGACACCTACCTGGGCCGCCCCTGGCACCCGGACTCCCGC GTCATCTTCATGTCGTCCTACTTGGACGGCAACGTGGTCAATCCCAAGGGATGGGTGGCG TGGCGCATCAACAACGCCACCGACGAGCGCTCCACCGCCAGCACCGTCTACTACGCGGAG TACAACAACACTGGGGCTGGGGCCAACGTCACCCAGCGTGTTAACTGGCATGGTTTCCAC CTTCTTGCACCACACGAGGTACGCAATTTCACCGTTGACAGCTTCATCGACGGTGGCAGT TGGCTGCCAGAGACCAACGTCCCGTACCATCTCGATCTCGATCTCGGTCTGTAATAATAC CTGCTACTCTCTTTATTTACTGTTTGCCTGCCTATATTTGCTTGGTATTGGTATTGTATC ATCGATCTCGATGTGCTAGCTCCTGTGTGTGTAGTATGCCATGGTTTGTACGTAACTGGT ACTGTATGATGCATGCGTGCTCCTGTGTGTGTGTGTATATGCGATATGATGGTTTGTAAC TGGTACTGTATGATCTCGATGTGCTCCGATGTGGCTGTGTGTATTGCGATGGTTAATGGT TTGTAACTTAATTTTCTTTCTTTATGCACTGTCTGAACGAGGAATAAGCACTGTATATAT GTTTGTATT