Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0206950-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:6242130:6243735:-1 gene:Os08g0206950 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os08t0206950-00)
Sequence

ATGAGCACCAAATTTATCGTTCCTCTCTCTTGCTGCATATCTGCACTTGTGCTGCTCTCA
TCACATCTCCATAGTCCAGCCATTTCTTCATTCCTTGGAATCCTTCTTGATCTTGCAGCA
CCTTCCCTTCCATTCTATCTGCTAACATCTGGCACTACAAATTCTACTGGAAATCATCGG
TATCGCGACGAATATAATCCGTTATGCGATGATTTCCCACCGGAATTTCCACCGCCAGAT
ACCGCGGCAATTTCAATCTTCTGTGTCGATCCCAATGGCTGCTGCAACTTCACAACGGTG
CAGGCAGCGGTCAATGCTGTTCCAAGCTTCAGCAAGAAGAGGAATGTTGTATGGATCAAC
AAGGGAATCTACTATGAGAAGGTGACAGTCCCAGCAACCAAGCCCAACATCACATTTCAG
GGCCAGGGATTCGATCTGACGGCAATTTCTTGGAACGACACTGCCAACTCATCGCATGGA
ACGTTCTACAGCGGTTCAGTGTCCGTTTTCGCAACAGGCTTTGTTGCGAAAAACATCAGC
TTCATTAATGTGGCACCAATCCCAAGACCCGGTGATGTCGGTGCTCAGGCGGTAGCACTG
AGGATCGGCGGTGACCAGGCAGCATTCTGGGGTTGCGGCTTCTTTGGTGCGCAAGATACG
CTTCACGATGATCGTGGCCGGCATTACTTCAAGGAATGCTTCATCCAGGGTTCCATTGAC
TTTATCTTTGGAGATGCCAGGTCACTCTATGAAAATTGCAGGGTGATTTCCATAGCAGAT
CCTGTTCCTGCAGGGGTGAGAACCATCACAGGTTCAGTCACTGCGCATGCCCGGGAATCT
GTAGACGACAACACTGGCTACTCTTTTGTCAATTGCAGCATTGGCGGCACCGGCAGGATA
TGGCTGGGGAGAGCATGGAGACCATATTCCACAGTCGTCTTCGCCTACACTTCAATGTCA
GACATCATTGCCTCTGAAGGATGGAATGATTGGAATGATCCTTCAAGAGACCAGACTGTG
TTCTATGGAGAGTACAGGTGCACGGGTGATGGTGCAAACTTATCAGATAGAGTGCCATAT
GCTCAGAAGCTTAGTGATGTGCAGGTTTTGCCTTACCTGAACACTTCTTTTATTGACGGA
GACAGATGGCTAAAGCCATACTGTGATTCACTGATATCTGCTTGA

Peptide Sequence

PEP ID

Os08t0206950-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:6242130:6243735:-1 gene:Os08g0206950 transcript:Os08t0206950-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os08t0206950-00)
Sequence

MSTKFIVPLSCCISALVLLSSHLHSPAISSFLGILLDLAAPSLPFYLLTSGTTNSTGNHR
YRDEYNPLCDDFPPEFPPPDTAAISIFCVDPNGCCNFTTVQAAVNAVPSFSKKRNVVWIN
KGIYYEKVTVPATKPNITFQGQGFDLTAISWNDTANSSHGTFYSGSVSVFATGFVAKNIS
FINVAPIPRPGDVGAQAVALRIGGDQAAFWGCGFFGAQDTLHDDRGRHYFKECFIQGSID
FIFGDARSLYENCRVISIADPVPAGVRTITGSVTAHARESVDDNTGYSFVNCSIGGTGRI
WLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPSRDQTVFYGEYRCTGDGANLSDRVPY
AQKLSDVQVLPYLNTSFIDGDRWLKPYCDSLISA

Transcript Sequence

Transcript ID

Os08t0206950-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:6242130:6243735:-1 gene:Os08g0206950 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os08t0206950-00)
Sequence

AATAGTGAATCAATTCAGTCATACAAATGAGCACCAAATTTATCGTTCCTCTCTCTTGCT
GCATATCTGCACTTGTGCTGCTCTCATCACATCTCCATAGTCCAGCCATTTCTTCATTCC
TTGGAATCCTTCTTGATCTTGCAGCACCTTCCCTTCCATTCTATCTGCTAACATCTGGCA
CTACAAATTCTACTGGAAATCATCGGTATCGCGACGAATATAATCCGTTATGCGATGATT
TCCCACCGGAATTTCCACCGCCAGATACCGCGGCAATTTCAATCTTCTGTGTCGATCCCA
ATGGCTGCTGCAACTTCACAACGGTGCAGGCAGCGGTCAATGCTGTTCCAAGCTTCAGCA
AGAAGAGGAATGTTGTATGGATCAACAAGGGAATCTACTATGAGAAGGTGACAGTCCCAG
CAACCAAGCCCAACATCACATTTCAGGGCCAGGGATTCGATCTGACGGCAATTTCTTGGA
ACGACACTGCCAACTCATCGCATGGAACGTTCTACAGCGGTTCAGTGTCCGTTTTCGCAA
CAGGCTTTGTTGCGAAAAACATCAGCTTCATTAATGTGGCACCAATCCCAAGACCCGGTG
ATGTCGGTGCTCAGGCGGTAGCACTGAGGATCGGCGGTGACCAGGCAGCATTCTGGGGTT
GCGGCTTCTTTGGTGCGCAAGATACGCTTCACGATGATCGTGGCCGGCATTACTTCAAGG
AATGCTTCATCCAGGGTTCCATTGACTTTATCTTTGGAGATGCCAGGTCACTCTATGAAA
ATTGCAGGGTGATTTCCATAGCAGATCCTGTTCCTGCAGGGGTGAGAACCATCACAGGTT
CAGTCACTGCGCATGCCCGGGAATCTGTAGACGACAACACTGGCTACTCTTTTGTCAATT
GCAGCATTGGCGGCACCGGCAGGATATGGCTGGGGAGAGCATGGAGACCATATTCCACAG
TCGTCTTCGCCTACACTTCAATGTCAGACATCATTGCCTCTGAAGGATGGAATGATTGGA
ATGATCCTTCAAGAGACCAGACTGTGTTCTATGGAGAGTACAGGTGCACGGGTGATGGTG
CAAACTTATCAGATAGAGTGCCATATGCTCAGAAGCTTAGTGATGTGCAGGTTTTGCCTT
ACCTGAACACTTCTTTTATTGACGGAGACAGATGGCTAAAGCCATACTGTGATTCACTGA
TATCTGCTTGAAGCAACCAAACATAGGCATTAATTGTATT