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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0187900-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:5145659:5146534:1 gene:Os08g0187900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-conjugating enzyme, E2 domain containing protein. (Os08t0187900-00)
Sequence

ATGTACGCCATGACGCCGCGCTGCCATCTCCCGCCGCCGTGCCGCGCGGCCTCCACGACG
CCGGCGACGTCGACGGCGCTGAGCACGCCGCCGCCGTCACGCGCCGGCCCGGACGAGCTG
CGCTCCACGTGGGCGCACCGCGCGTGGACGCTTGCCGGCTCGGCCGCCGTGCTCTCCTCC
CTCTCCACCTCCGCCACCCTCGCTGCCGCCGACGCCGACGCCAACGGCGCGGCGGCCGCC
TTCGCCGCGCCGCTCGCCGCCGCGCTGGCCGCCTACTCCCTCGCCGACCTCGCCACGGGC
GTCTACCACTGGCTCGTCGACAACTACGGCGACGCCGACACCCCGGTGCTCGGCCCCCAG
ATCGCCGCGTTCCAGGGCCACCACCGCCACCCCTCCACCATCACGCGGCGGGAGCCGTGC
AACAACCTGCACGCCCTGGCGCGCGCCGTCGCGCTCGCCCTCCCGCCCGCCGGCGCCGCC
CTCGCCGCCGCGGGCGCGCCCGCGTCCGCGCACGCCTTCGCCGCCGTGTTCGCGGCGTGC
GTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGGCAACCCGCGACGGCTGCCCCCC
GGCGTCGGGGCGATGCAGCGCGCCGGCGTGCTCGTGTCGCGCGCCCAGCACGGCGCGCAC
CACCGCGCGCCGTACGACAACAACTACTGCATCGTCAGCGGAATGTGGAACGCGACGCTG
GACAGGCACCGCGTGTTCGAGGCGATGGAGATGGTCGTCTTCCTCCGCACCGGCGTCCGC
CCGCGCTCGTGGGACGAGCCGGACGCCGCCTGGACGGAGGACTACGACGACACCGCCGCC
GTCGCCGGCGGTGACACTTCGTTGGATACACAGTGA

Peptide Sequence

PEP ID

Os08t0187900-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:5145659:5146534:1 gene:Os08g0187900 transcript:Os08t0187900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-conjugating enzyme, E2 domain containing protein. (Os08t0187900-00)
Sequence

MYAMTPRCHLPPPCRAASTTPATSTALSTPPPSRAGPDELRSTWAHRAWTLAGSAAVLSS
LSTSATLAAADADANGAAAAFAAPLAAALAAYSLADLATGVYHWLVDNYGDADTPVLGPQ
IAAFQGHHRHPSTITRREPCNNLHALARAVALALPPAGAALAAAGAPASAHAFAAVFAAC
VVLSQQFHAWAHGNPRRLPPGVGAMQRAGVLVSRAQHGAHHRAPYDNNYCIVSGMWNATL
DRHRVFEAMEMVVFLRTGVRPRSWDEPDAAWTEDYDDTAAVAGGDTSLDTQ

Transcript Sequence

Transcript ID

Os08t0187900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:5145659:5146534:1 gene:Os08g0187900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-conjugating enzyme, E2 domain containing protein. (Os08t0187900-00)
Sequence

ATGTACGCCATGACGCCGCGCTGCCATCTCCCGCCGCCGTGCCGCGCGGCCTCCACGACG
CCGGCGACGTCGACGGCGCTGAGCACGCCGCCGCCGTCACGCGCCGGCCCGGACGAGCTG
CGCTCCACGTGGGCGCACCGCGCGTGGACGCTTGCCGGCTCGGCCGCCGTGCTCTCCTCC
CTCTCCACCTCCGCCACCCTCGCTGCCGCCGACGCCGACGCCAACGGCGCGGCGGCCGCC
TTCGCCGCGCCGCTCGCCGCCGCGCTGGCCGCCTACTCCCTCGCCGACCTCGCCACGGGC
GTCTACCACTGGCTCGTCGACAACTACGGCGACGCCGACACCCCGGTGCTCGGCCCCCAG
ATCGCCGCGTTCCAGGGCCACCACCGCCACCCCTCCACCATCACGCGGCGGGAGCCGTGC
AACAACCTGCACGCCCTGGCGCGCGCCGTCGCGCTCGCCCTCCCGCCCGCCGGCGCCGCC
CTCGCCGCCGCGGGCGCGCCCGCGTCCGCGCACGCCTTCGCCGCCGTGTTCGCGGCGTGC
GTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGGCAACCCGCGACGGCTGCCCCCC
GGCGTCGGGGCGATGCAGCGCGCCGGCGTGCTCGTGTCGCGCGCCCAGCACGGCGCGCAC
CACCGCGCGCCGTACGACAACAACTACTGCATCGTCAGCGGAATGTGGAACGCGACGCTG
GACAGGCACCGCGTGTTCGAGGCGATGGAGATGGTCGTCTTCCTCCGCACCGGCGTCCGC
CCGCGCTCGTGGGACGAGCCGGACGCCGCCTGGACGGAGGACTACGACGACACCGCCGCC
GTCGCCGGCGGTGACACTTCGTTGGATACACAGTGA