Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0178100-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:4571022:4580739:1 gene:Os08g0178100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pep3/Vps18/deep orange domain containing protein. (Os08t0178100-01)
Sequence	ATGGACGCCGCCGCCGCCGCCTTCGCCCCCGGCGGGCAGCTCTTCTCCGTCGATCCCCTC GAGCGGCACGCGGCGAGGGGCCATGGCGTGGTCACCTCCATGGCTGCCGGCAGCGACGTC ATCGTCCTCGGCACCTCCCGCGGATGGCTCGTCCGCCACGACTTCTCCTTCGAGGACGCC CATGATCTCGACCTCGGGACCGGCCGCTCCGGCGAGCACTCCGTGCACCGCGTCTTCCTC GACCCCGGCGGGAAGCACTGCGTCGCCACGGTGGTCCACCCGGGGGGCGCCGAGACGTAC TACCACCACGCCAGGTGGCCGCGCCCCAAGCTGCTCCCCCGCCTCCGCAACGTCCTCGTC AATGCCGTCGCGTGGAACCGCCAAACCATCACCGAAGCGTCGACCAAGGAGGTGATCCTG GGGACAGAGGATGGGCAGATCTTCGAGATTGCAGTAGACGAGGCCGACAAGAAGGAGAAG TATGTGAAGTCGCTCTTTACGCTCTCTGAGCTGCAGGAGGGCATCAAGGGCCTGCAGATG GAAACCGCCGTGGTTGGGAACGCCACAAGGTTCTATGTGATGGCTGTCACACCAACACGG TTGTACTCATTCACGGGCATCGGTTCATTAGAAACTGTTTTTGCTAGCTATTCTGATCGT GCGATACACTTTATGGAGCTCCCAGGAGATATTCCAAATAGTGAATTACATTTCTTTATC AAGCAAAGAAGGGCTAAGCATTTTGGATGGCTTTCTGGAGCTGGAATTTACCATGGTGAA CTGAATTTTGGAGCTCAACACAGCTCTACAAGTGGGGATGAGAACTTTGTCGAAAATAAA GGTTTTTTTGACTACTCAAAATTGGGAGAATCTGGTATCAAGCCAAGGTCATTTGCATTG TCTGAATTCCATTTTCTGCTTCTCATCAGGGACAAGATTAAGGTAGTGAACAGAATCAGC CAGCAAATAGTGGAGGAACTTATAGTCGATAGTTCACCAGAAGTTACAAAAGGAATAATT GGACTTTGTAGTGATGCATCAACTGGGCTTTTCTATGCATACGATGAAAATTCTATATTC CAGATTTCATCATCTGATGAGGGTCGTGATATGTGGCAAGTATACCTGGACATGAAAGAA TATGCTACGGCACTGTCACATTGTCGTAACTCCTTCCAGAGGGACCAAGTCTATCTAGTG CAGGCTGATACTGCATTCAATACAAAAGAGTACTATATAGCAGCTTCCTTCTATGCAAAG ATGAATTATATCCTATCATTTGAGGAGATCAGCTTAAAATTTATATCTGTTGGTGAGCAG GATGCTCTCAGGACTTTCTTGTTGAGAAGGCTTGATAACCTAACGAAAGATGACAGAATG CAGATTACAATGATCTCAACTTGGGCTACTGAGCTGTACTTGGACAAGATTAATCGCCTC CTGTTGGAAGATGGCACAGGAGCCACGTCAAATGCTGTAGCAGATTCTAAAGACTCGGAA TATCGTTCAATAGTAAATGAATTCCGTGCTTTTCTAAGTGATAGCAAAGATGTATTAGAT GAGGCAACAACAATGAGACTGTTGGAAAGTTATGGGAGAGTGGATGAGCTGGTTTATTTT GCTGGTTTAAAGGAGCAACATGAAATTGTGGTTCATCATTACATTCAGCAAGGAGAAGCA AGAAAGGCATTGGAAGTTCTTCAGCGACATAATGTTCTAGTAGACCTTGTGTATAAATTT GCTCCAGATTTAATCATGTTAGATGCTTATGAAACTGTTGAATCATGGATGATGGCAAGA AATAAGTTGAATCCAGGGAAGCTTATACCGGCAATGATGCGTTATGTGAGCGAACCACAT GCCAAGAATGAAACACATGAAGTTATCAAGTACTTGGAATTCTGTGTAAAAGATTTGAAC AATGAGGATCCTGGAGTGCATAATTTGTTGCTCTCACTGTATGCCAAGAAGGACGATGAG TCTCAGCTTTTGCAATTCTTGGACACTAAGTTTGGTAAAGGACAGACAAATGGCCCTGAG TTCTTTTACGACCCCAAATATGCTCTGCGTCTATGTCTTCAAGAGAAGAGAATGCGTGCT TGTGTTCGTATTTACAGCATGATGTCCATGCATGAAGAAGCTGTTGCACTTGCATTAACG GTGGACTTAGAGCTTGCAAAAGCAGAAGCAGATAAAGTTGAAGATGATGAAGAACTTAGA AAGAAGCTGTGGCTTAAGGTTGCAAAGCATGTCATTGAGCAAGAGAAGGGAGTCAAGAGG GAGAACATAAAGAAAGCTATAGAATTCCTATCAGAGACTAACAACTTGTTGAAGATTGAG GATATCCTGCCATTTTTCCCAGACTTCGTATTGATCGATGACTTTAAAGAGGAAATATGC AAATCTCTCAAGGACTATGACAGCCAAATCGATCAGCTGAAACAGGAGATGGATGATGCT ACTCGTGGGGCAGACAACATCAGAAGTGATATTGGTGCCCTTGCTCAGAGATACACTGTA ATTGATCGTGAGGAGGAATGTGGGGTGTGCAAGCGCAAAATATTGACTGCTGGAGGACTG CACCAGGTAGGAAGAAGCTACACATCTACCGGACACATGGCCCCCTTTTATGTGTTTCCT TGTGGACATGCCTTTCATGCGAATTGTTTGATCGCACATGTAACTCGTTGTAATAGCAGC CAAACACAAGCTGAAAAAATACTGGACCTCCAAAAGCGGCTTAGCCTAATGGACAGGAAA GCAGCAAAGGAAAATGGCGGAAACATGAATGGTGAATCTATTATCAGTGCGACACCAATT GACAAGTTGAGGTCCCAGCTGGATGATGCTGTAGCGAGCGAGTGCCCCTTCTGCGGCGAT CTGATGATCAAGGAGATTTCATTGCCTTTCATTCTCCCTGAAGAGTCTGATGAAAAGGCT TCGTGGGAAATTAAACCGCAACCAACGGGTCAGAAAATTCTTCCAATGACCATGTCTATA TGA

Peptide Sequence

PEP ID	Os08t0178100-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:4571022:4580739:1 gene:Os08g0178100 transcript:Os08t0178100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pep3/Vps18/deep orange domain containing protein. (Os08t0178100-01)
Sequence	MDAAAAAFAPGGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLGTSRGWLVRHDFSFEDA HDLDLGTGRSGEHSVHRVFLDPGGKHCVATVVHPGGAETYYHHARWPRPKLLPRLRNVLV NAVAWNRQTITEASTKEVILGTEDGQIFEIAVDEADKKEKYVKSLFTLSELQEGIKGLQM ETAVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYSDRAIHFMELPGDIPNSELHFFI KQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGESGIKPRSFAL SEFHFLLLIRDKIKVVNRISQQIVEELIVDSSPEVTKGIIGLCSDASTGLFYAYDENSIF QISSSDEGRDMWQVYLDMKEYATALSHCRNSFQRDQVYLVQADTAFNTKEYYIAASFYAK MNYILSFEEISLKFISVGEQDALRTFLLRRLDNLTKDDRMQITMISTWATELYLDKINRL LLEDGTGATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYF AGLKEQHEIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMAR NKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDE SQLLQFLDTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALT VDLELAKAEADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIE DILPFFPDFVLIDDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTV IDREEECGVCKRKILTAGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSS QTQAEKILDLQKRLSLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGD LMIKEISLPFILPEESDEKASWEIKPQPTGQKILPMTMSI

Transcript Sequence

Transcript ID	Os08t0178100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:4571022:4580739:1 gene:Os08g0178100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pep3/Vps18/deep orange domain containing protein. (Os08t0178100-01)
Sequence	AATCGCATCGCCTCCGACGAGCTCGCGGCGGCCGGCCGGCGAGGCGACTGCGACTCCGAC GACCATGGACGCCGCCGCCGCCGCCTTCGCCCCCGGCGGGCAGCTCTTCTCCGTCGATCC CCTCGAGCGGCACGCGGCGAGGGGCCATGGCGTGGTCACCTCCATGGCTGCCGGCAGCGA CGTCATCGTCCTCGGCACCTCCCGCGGATGGCTCGTCCGCCACGACTTCTCCTTCGAGGA CGCCCATGATCTCGACCTCGGGACCGGCCGCTCCGGCGAGCACTCCGTGCACCGCGTCTT CCTCGACCCCGGCGGGAAGCACTGCGTCGCCACGGTGGTCCACCCGGGGGGCGCCGAGAC GTACTACCACCACGCCAGGTGGCCGCGCCCCAAGCTGCTCCCCCGCCTCCGCAACGTCCT CGTCAATGCCGTCGCGTGGAACCGCCAAACCATCACCGAAGCGTCGACCAAGGAGGTGAT CCTGGGGACAGAGGATGGGCAGATCTTCGAGATTGCAGTAGACGAGGCCGACAAGAAGGA GAAGTATGTGAAGTCGCTCTTTACGCTCTCTGAGCTGCAGGAGGGCATCAAGGGCCTGCA GATGGAAACCGCCGTGGTTGGGAACGCCACAAGGTTCTATGTGATGGCTGTCACACCAAC ACGGTTGTACTCATTCACGGGCATCGGTTCATTAGAAACTGTTTTTGCTAGCTATTCTGA TCGTGCGATACACTTTATGGAGCTCCCAGGAGATATTCCAAATAGTGAATTACATTTCTT TATCAAGCAAAGAAGGGCTAAGCATTTTGGATGGCTTTCTGGAGCTGGAATTTACCATGG TGAACTGAATTTTGGAGCTCAACACAGCTCTACAAGTGGGGATGAGAACTTTGTCGAAAA TAAAGGTTTTTTTGACTACTCAAAATTGGGAGAATCTGGTATCAAGCCAAGGTCATTTGC ATTGTCTGAATTCCATTTTCTGCTTCTCATCAGGGACAAGATTAAGGTAGTGAACAGAAT CAGCCAGCAAATAGTGGAGGAACTTATAGTCGATAGTTCACCAGAAGTTACAAAAGGAAT AATTGGACTTTGTAGTGATGCATCAACTGGGCTTTTCTATGCATACGATGAAAATTCTAT ATTCCAGATTTCATCATCTGATGAGGGTCGTGATATGTGGCAAGTATACCTGGACATGAA AGAATATGCTACGGCACTGTCACATTGTCGTAACTCCTTCCAGAGGGACCAAGTCTATCT AGTGCAGGCTGATACTGCATTCAATACAAAAGAGTACTATATAGCAGCTTCCTTCTATGC AAAGATGAATTATATCCTATCATTTGAGGAGATCAGCTTAAAATTTATATCTGTTGGTGA GCAGGATGCTCTCAGGACTTTCTTGTTGAGAAGGCTTGATAACCTAACGAAAGATGACAG AATGCAGATTACAATGATCTCAACTTGGGCTACTGAGCTGTACTTGGACAAGATTAATCG CCTCCTGTTGGAAGATGGCACAGGAGCCACGTCAAATGCTGTAGCAGATTCTAAAGACTC GGAATATCGTTCAATAGTAAATGAATTCCGTGCTTTTCTAAGTGATAGCAAAGATGTATT AGATGAGGCAACAACAATGAGACTGTTGGAAAGTTATGGGAGAGTGGATGAGCTGGTTTA TTTTGCTGGTTTAAAGGAGCAACATGAAATTGTGGTTCATCATTACATTCAGCAAGGAGA AGCAAGAAAGGCATTGGAAGTTCTTCAGCGACATAATGTTCTAGTAGACCTTGTGTATAA ATTTGCTCCAGATTTAATCATGTTAGATGCTTATGAAACTGTTGAATCATGGATGATGGC AAGAAATAAGTTGAATCCAGGGAAGCTTATACCGGCAATGATGCGTTATGTGAGCGAACC ACATGCCAAGAATGAAACACATGAAGTTATCAAGTACTTGGAATTCTGTGTAAAAGATTT GAACAATGAGGATCCTGGAGTGCATAATTTGTTGCTCTCACTGTATGCCAAGAAGGACGA TGAGTCTCAGCTTTTGCAATTCTTGGACACTAAGTTTGGTAAAGGACAGACAAATGGCCC TGAGTTCTTTTACGACCCCAAATATGCTCTGCGTCTATGTCTTCAAGAGAAGAGAATGCG TGCTTGTGTTCGTATTTACAGCATGATGTCCATGCATGAAGAAGCTGTTGCACTTGCATT AACGGTGGACTTAGAGCTTGCAAAAGCAGAAGCAGATAAAGTTGAAGATGATGAAGAACT TAGAAAGAAGCTGTGGCTTAAGGTTGCAAAGCATGTCATTGAGCAAGAGAAGGGAGTCAA GAGGGAGAACATAAAGAAAGCTATAGAATTCCTATCAGAGACTAACAACTTGTTGAAGAT TGAGGATATCCTGCCATTTTTCCCAGACTTCGTATTGATCGATGACTTTAAAGAGGAAAT ATGCAAATCTCTCAAGGACTATGACAGCCAAATCGATCAGCTGAAACAGGAGATGGATGA TGCTACTCGTGGGGCAGACAACATCAGAAGTGATATTGGTGCCCTTGCTCAGAGATACAC TGTAATTGATCGTGAGGAGGAATGTGGGGTGTGCAAGCGCAAAATATTGACTGCTGGAGG ACTGCACCAGGTAGGAAGAAGCTACACATCTACCGGACACATGGCCCCCTTTTATGTGTT TCCTTGTGGACATGCCTTTCATGCGAATTGTTTGATCGCACATGTAACTCGTTGTAATAG CAGCCAAACACAAGCTGAAAAAATACTGGACCTCCAAAAGCGGCTTAGCCTAATGGACAG GAAAGCAGCAAAGGAAAATGGCGGAAACATGAATGGTGAATCTATTATCAGTGCGACACC AATTGACAAGTTGAGGTCCCAGCTGGATGATGCTGTAGCGAGCGAGTGCCCCTTCTGCGG CGATCTGATGATCAAGGAGATTTCATTGCCTTTCATTCTCCCTGAAGAGTCTGATGAAAA GGCTTCGTGGGAAATTAAACCGCAACCAACGGGTCAGAAAATTCTTCCAATGACCATGTC TATATGATTCTACTAGTAAAAGCTGAGATGGAATAGAATGTTTTTCGAGTTTGTATGTGA TTTTGTAATGCTGAATATATGCTCTTTCATGTCCAATTTCTGGTTGGGTGGCTTTGGTTT TTGATAATTGCCCAGCTCGTGTATCTTTCTGACGAGCAGAACATTAGCTATCCTATCCAG AATAGTTTGTGTACAGAAACATCATCTTCCACTTCACTTGGGCTCTTGTACATGCCTCCT TTCATCAACTTTGCTCATAATAAAGTTGCGATTTGTTAGGG