Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0175000-00
CDS Infomation	cds chromosome:IRGSP-1.0:8:4371022:4372930:1 gene:Os08g0175000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to strictosidine synthase 1. (Os08t0175000-00)
Sequence	ATGGCTCGCCGTCGTCGAGGTTTTCCGGCGACGTTGGTCACGCTGCTGCGGCTCGTCGGC TGCCTGCTTCTTGCCTTCTTCCTCGCCGCGCCGCCGTGCGCCGCCGCGCAGCAGGTCAAG ACGTCGCACGCGCAGTTCGCGTTCCACCTCCCGCTCCCCGACGGCGTCACCGGCGCCGAG AGCCTCGCCTTCGACTCCTCCAACCATGGCCCCTACACCGGCGTCTCCGACGGCCGCGTC CTCCGCTGGGGCGGCGCCGCCGCCGGCTGGACCACCTTCGCGCACCACGAAAACTACCGG AAGATTCCGATGTGCACGACGCCGGTGGCGCCGGCGGAGGAGACGGAGAGCATGTGCGGG CGCCCGCTGGGGCTCGCGTTCCACGACAGGACGGGCGACCTCTACATCGCCGACGCGTAC AAGGGCCTGATGCGTGTCGGGCCGCGCGGCGGCGAGGCCGAGGTGCTCGCCGCCGGCGCG GACGGCGTCCCGTTCAACTTCGTCAATGGCATCGACGTCGACCAGGCCACCGGTGATGTC TACTTCACCGATAGTAGCACCACCTACCCACGCCGGTTTAACAGCGAGATCATGATGAAT GCCGATGCGACGGCGCGGCTGCTAAAGTACGACGCGGCGACGAAGCGGGTGACCGTGCTC AGGGCCGGGCTTCCGTACGCCAATGGCGTGGCCGTCAGCCGCGACGGGAGCCACGCCGTG GTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGATCAAGGGGCCCAACGCCGGC GAGTACGAGCTCCTCGCCGACCTGCCGGGTTACCCCGACAACGTCCGGCGAGACGCCAAT GGGGGATACTGGGTGGCGCTCAACCAGGAGAAGGCGCGGCTCGACGCCACCGCGGCGGCG GCGGTGGCTCCTCCGGCGAAGCACCTCGTCGGCGTCCGGCTCGACGGCGATGGCGTCGAG GTCGAGGAGCTGACGGCTGCCAAGGGTGTGACGCTCAGTGAGGTTGTGGAGAGGGGCGGG AAATTGTGGCTCGGCTCTGTTGAACTCGATTTCATTGGCCTAATGCAATGA

Peptide Sequence

PEP ID	Os08t0175000-00
PEP Infomation	pep chromosome:IRGSP-1.0:8:4371022:4372930:1 gene:Os08g0175000 transcript:Os08t0175000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to strictosidine synthase 1. (Os08t0175000-00)
Sequence	MARRRRGFPATLVTLLRLVGCLLLAFFLAAPPCAAAQQVKTSHAQFAFHLPLPDGVTGAE SLAFDSSNHGPYTGVSDGRVLRWGGAAAGWTTFAHHENYRKIPMCTTPVAPAEETESMCG RPLGLAFHDRTGDLYIADAYKGLMRVGPRGGEAEVLAAGADGVPFNFVNGIDVDQATGDV YFTDSSTTYPRRFNSEIMMNADATARLLKYDAATKRVTVLRAGLPYANGVAVSRDGSHAV VAHTVPCQAFRYWIKGPNAGEYELLADLPGYPDNVRRDANGGYWVALNQEKARLDATAAA AVAPPAKHLVGVRLDGDGVEVEELTAAKGVTLSEVVERGGKLWLGSVELDFIGLMQ

Transcript Sequence

Transcript ID	Os08t0175000-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:4371022:4372930:1 gene:Os08g0175000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to strictosidine synthase 1. (Os08t0175000-00)
Sequence	ATGGCTCGCCGTCGTCGAGGTTTTCCGGCGACGTTGGTCACGCTGCTGCGGCTCGTCGGC TGCCTGCTTCTTGCCTTCTTCCTCGCCGCGCCGCCGTGCGCCGCCGCGCAGCAGGTCAAG ACGTCGCACGCGCAGTTCGCGTTCCACCTCCCGCTCCCCGACGGCGTCACCGGCGCCGAG AGCCTCGCCTTCGACTCCTCCAACCATGGCCCCTACACCGGCGTCTCCGACGGCCGCGTC CTCCGCTGGGGCGGCGCCGCCGCCGGCTGGACCACCTTCGCGCACCACGAAAACTACCGG AAGATTCCGATGTGCACGACGCCGGTGGCGCCGGCGGAGGAGACGGAGAGCATGTGCGGG CGCCCGCTGGGGCTCGCGTTCCACGACAGGACGGGCGACCTCTACATCGCCGACGCGTAC AAGGGCCTGATGCGTGTCGGGCCGCGCGGCGGCGAGGCCGAGGTGCTCGCCGCCGGCGCG GACGGCGTCCCGTTCAACTTCGTCAATGGCATCGACGTCGACCAGGCCACCGGTGATGTC TACTTCACCGATAGTAGCACCACCTACCCACGCCGGTTTAACAGCGAGATCATGATGAAT GCCGATGCGACGGCGCGGCTGCTAAAGTACGACGCGGCGACGAAGCGGGTGACCGTGCTC AGGGCCGGGCTTCCGTACGCCAATGGCGTGGCCGTCAGCCGCGACGGGAGCCACGCCGTG GTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGATCAAGGGGCCCAACGCCGGC GAGTACGAGCTCCTCGCCGACCTGCCGGGTTACCCCGACAACGTCCGGCGAGACGCCAAT GGGGGATACTGGGTGGCGCTCAACCAGGAGAAGGCGCGGCTCGACGCCACCGCGGCGGCG GCGGTGGCTCCTCCGGCGAAGCACCTCGTCGGCGTCCGGCTCGACGGCGATGGCGTCGAG GTCGAGGAGCTGACGGCTGCCAAGGGTGTGACGCTCAGTGAGGTTGTGGAGAGGGGCGGG AAATTGTGGCTCGGCTCTGTTGAACTCGATTTCATTGGCCTAATGCAATGA