Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0174500-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:4332106:4334829:-1 gene:Os08g0174500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Heading date (QTL)-5(t) description:Putative HAP3 subunit of the CCAAT box-binding transcription factor, Flowering time, Short-day promotion, Long-day repression (Os08t0174500-01);Similar to Heading date 5. (Os08t0174500-02)
Sequence	ATGAAGAGTAGGAAGAGCTATGGGCACTTGCTGAGCCCGGTGGGCAGCCCGCCGTTGGAC AACGAGTCCGGCGAGGCGGCGGCGGCGGCTGCGGCTGGCGGCGGCGGCTGCGGGAGCAGC GCCGGGTATGTCGTCTACGGCGGCGGCGGCGGTGGGGACTCGCCGGCGAAGGAGCAGGAC AGGTTCCTGCCGATCGCGAACGTGAGCCGCATCATGAAGCGGTCGCTGCCGGCGAACGCC AAGATCTCCAAGGAGTCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTC GTTACAGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGGAAGACCATCAACGGCGAC GACCTCCTCTGGGCCATGACCACGCTGGGGTTCGAGGCCTACGTCGGCCCGCTCAAGTCC TACCTCAACCGCTACCGCGAGGCCGAGGGCGAGAAGGCCGACGTGCTCGGCGGCGCCGGC GGCGCCGCCGCGGCGCGCCACGGCGAGGGCGGTTGCTGCGGCGGCGGCGGCGGCGGCGCC GATGGCGTCGTCATCGACGGGCATTACCCGCTCGCCGGCGGCCTGTCACACTCACACCAT GGTCATCAGCAGCAGGACGGCGGCGGCGACGTCGGGCTCATGATGGGCGGCGGCGACGCC GGCGTCGGGTACAACGCCGGGGCCGGGTCGACGACGACGGCGTTCTACGCGCCGGCGGCG ACGGCGGCGTCAGGGAACAAGGCGTACTGCGGCGGCGACGGGTCGAGGGTGATGGAGTTC GAGGGCATCATTGTCGCGCTCTACACGGCCTGGAGGATGCTGTTGTACTGCCCTTTTTCA CTACCGTCGCTCCGGCTCCACGCATGA

Peptide Sequence

PEP ID	Os08t0174500-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:4332106:4334829:-1 gene:Os08g0174500 transcript:Os08t0174500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Heading date (QTL)-5(t) description:Putative HAP3 subunit of the CCAAT box-binding transcription factor, Flowering time, Short-day promotion, Long-day repression (Os08t0174500-01);Similar to Heading date 5. (Os08t0174500-02)
Sequence	MKSRKSYGHLLSPVGSPPLDNESGEAAAAAAAGGGGCGSSAGYVVYGGGGGGDSPAKEQD RFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTINGD DLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADVLGGAGGAAAARHGEGGCCGGGGGGA DGVVIDGHYPLAGGLSHSHHGHQQQDGGGDVGLMMGGGDAGVGYNAGAGSTTTAFYAPAA TAASGNKAYCGGDGSRVMEFEGIIVALYTAWRMLLYCPFSLPSLRLHA

Transcript Sequence

Transcript ID	Os08t0174500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:4332106:4334829:-1 gene:Os08g0174500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Heading date (QTL)-5(t) description:Putative HAP3 subunit of the CCAAT box-binding transcription factor, Flowering time, Short-day promotion, Long-day repression (Os08t0174500-01);Similar to Heading date 5. (Os08t0174500-02)
Sequence	ACTCCCATAACCTCCCCCTTCTCTCTCTCTCTAACTACACACTCTCTCTCTAGCTAGCTA GCTAGCTATAGCTAGTGTTGTTAGCTTCACATGAAGAGTAGGAAGAGCTATGGGCACTTG CTGAGCCCGGTGGGCAGCCCGCCGTTGGACAACGAGTCCGGCGAGGCGGCGGCGGCGGCT GCGGCTGGCGGCGGCGGCTGCGGGAGCAGCGCCGGGTATGTCGTCTACGGCGGCGGCGGC GGTGGGGACTCGCCGGCGAAGGAGCAGGACAGGTTCCTGCCGATCGCGAACGTGAGCCGC ATCATGAAGCGGTCGCTGCCGGCGAACGCCAAGATCTCCAAGGAGTCGAAGGAGACGGTG CAGGAGTGCGTGTCGGAGTTCATCAGCTTCGTTACAGGCGAGGCCTCCGACAAGTGCCAG CGCGAGAAGCGGAAGACCATCAACGGCGACGACCTCCTCTGGGCCATGACCACGCTGGGG TTCGAGGCCTACGTCGGCCCGCTCAAGTCCTACCTCAACCGCTACCGCGAGGCCGAGGGC GAGAAGGCCGACGTGCTCGGCGGCGCCGGCGGCGCCGCCGCGGCGCGCCACGGCGAGGGC GGTTGCTGCGGCGGCGGCGGCGGCGGCGCCGATGGCGTCGTCATCGACGGGCATTACCCG CTCGCCGGCGGCCTGTCACACTCACACCATGGTCATCAGCAGCAGGACGGCGGCGGCGAC GTCGGGCTCATGATGGGCGGCGGCGACGCCGGCGTCGGGTACAACGCCGGGGCCGGGTCG ACGACGACGGCGTTCTACGCGCCGGCGGCGACGGCGGCGTCAGGGAACAAGGCGTACTGC GGCGGCGACGGGTCGAGGGTGATGGAGTTCGAGGGCATCATTGTCGCGCTCTACACGGCC TGGAGGATGCTGTTGTACTGCCCTTTTTCACTACCGTCGCTCCGGCTCCACGCATGAACC AGCGGCGTGGCAGCTGCCAACGATGCTGTGTCTGCTGCTGCACCAGCAGCGTTGGGACGA AACGAGTCACCATCGTTAGTGAGACAACTATCCCATGTGTGCCGGCGGTGGGGAACTAGA CATTCGGACCGTTGCCAGTATCGCATTCGTGCGGCCTCTTGGCACTGGCACGTAACTTGG CGTTGGTTATCAGGAATTCCTCAATCTAGACAACGTGGGCATGCGGGTCATAACGAACCC TAGCAACGCGGGTGACGTCGCCCATGCTGTTGTCGTTATCGAGCGAGCCGCCAGCAAGGA GGCAACGGAGGTGGTTGAACAACGAGACGGTGGGCGCCCACCCTCATGCTCACCCTAGTG GCGACGGCGACAGAGAAGGCCGGCGGAGGGAGAGACACTGACCAGTGAATCTCACACCGG TTTTTACCATACGTTACCACGTTGGCATGCTACGTGGGCAAAAATAATAAATAGTTAAGA AATCACGTCTTAAAAGCGGTAAAAAAAGTATAAATTAAGAAGGATATTTAGACAATTACC AAACTTAATAGTTACAAATAGTTAAATTTCCATGTTTTATGGGCTCTATGATTTGGATTA CTCGTGCTTCTGGTTCCTATGGGTAAATCTTGTGTGTCTTTCGATCAC