Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0163400-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:3732442:3736138:1 gene:Os08g0163400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR A description:RNA polymerase sigma-70 domain containing protein. (Os08t0163400-01);Similar to Plastid RNA polymerase sigma factor. (Os08t0163400-02)
Sequence	TGCCCGACGCCGTCGCCCGCCTCGCGCGCCGCCCACGCCCATGACCTCGAGTCCTCCCTC GAGGCCATCGTGCTGCTGCAGAGGTCCATGCTCGAGAAGCAGTGGGAGCTCCCCTTCGAC GACGACAACCACGCCATGGCCATCGGCTTGGCCGAGGATGACGACGACACCAGCAAGGCC ACCGTCGTCGTGGCGCGGTCCAGTGTCTCGGCGCGGCAGAGGAGGATGAGCGGGCGGCGG CGGGGGAGGACCAAGAACGGCGCGGCGCACTTCGCCGTCAGCCCCGAGCTGATCCAGAGC AGGAACAGGATCTACCTCAGGGGCACCGTCAGCAAGGAGCTCCTCACGCACAAGCAGGTC GTCCACCTCTCCCACAAGATCAAGGATGGCATCTGGCTGCAGCAGCAAAGATCAAAGCTG AAAGAGAAGCTGGGAAATGAGCCCTCATACAAACAGCTGGCGCATTCGCTGAAGATATCA CCGCCCGAGCTACGATCAAGGATGCACGAGTCGTTTCTTGCAAGGGAGATGCTAACAATG AGCAACCTCCGTTTGGTCATTTCCATTGCCCAGAAGTATGATAACCTTGGTGTTGAGTTG GCTGACCTCATTCAGGGTGGTCTGATAGGGTTACTCCGTGGGATCGAAAAATTTGATGCA TCCAGGGGCTTTAGAATTTCCACTTATGTATACTGGTGGATACGCCAGGGTGTTTCAAGA GCATTAGCTGAAAACTCAAAAACATTCAGGCTTCCAACTTATCTGCACGAGCGGCTGATT GCGATTCGTGGTGCAAAGTATGAGTTGGAAGATCAAGGAATTGCTCCAACAATAGAAAAC ATAGCAGGGTCACTCAACATATCAGAAAAGAAAGTACTCAATGCTACAGAGGCTGTGAAC AAGGTTCTTTCGTTGGATCAACAAGCATTTCCATCCTTAAACGGCTTACCTGGAGAGACA CTGCACAGTTACATAGAGGATCAAAATGTCGCAAATGATCCATGGCATGGATTTGAGGAG TGGTATCTCAAGGAAGAAGTCAACAAGCTTTTAAACTCAACTCTCAACGAGCGTGAGAGG GACATTATCCGGTTATATCATGGCATAGGAAAACAATGCCATACATGGGAGGATATTAGC AGACAATTCGGGTTGTCGAGGGAGAGGGTGAGGCAAGTAGGACTCATCGCAATGGAGAAG CTGAAGCATGCTGCGAGGAGGAAAAATTTGGAGGCATTGCTTGAGGATTATTGA

Peptide Sequence

PEP ID	Os08t0163400-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:3732442:3736138:1 gene:Os08g0163400 transcript:Os08t0163400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR A description:RNA polymerase sigma-70 domain containing protein. (Os08t0163400-01);Similar to Plastid RNA polymerase sigma factor. (Os08t0163400-02)
Sequence	CPTPSPASRAAHAHDLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKA TVVVARSSVSARQRRMSGRRRGRTKNGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQV VHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTM SNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSR ALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVN KVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERER DIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY

Transcript Sequence

Transcript ID	Os08t0163400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:3732442:3736138:1 gene:Os08g0163400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR A description:RNA polymerase sigma-70 domain containing protein. (Os08t0163400-01);Similar to Plastid RNA polymerase sigma factor. (Os08t0163400-02)
Sequence	ATGGCCTCCCGCCCTCTCCGCCTCCTCTACCCTATCCTCTCCCTCCACACCCCACTCCGA CCACCACCACCACCTCGCCCGCGGTAACGCCGCCGCCGTCGCTCGCCGCGGTAAAACCAG CGCGCGCGAGAGAGTGGGTGTCCGTGTGGCCTACTACTTGCTTCCTCGGCGCGCGCGGCG CGTGTGTGCCTCGCATCCTCCACCACCACTAGTGCAGCCAAGTGCGTGCGTGTGTGTGTG TGCGGACACCGTTGCTGCCGCCGCCGCCGCCGCCGCGCGCAGGGTGGTGACAAGATGACG GCGACGCCAGCGGTGATCGGGCTGAGCGCGGGGAACAGGCTGCTGAGCGCGTCGTTCGGG CCGACCGACCTGATGCCCGACGCCGTCGCCCGCCTCGCGCGCCGCCCACGCCCATGACCT CGAGTCCTCCCTCGAGGCCATCGTGCTGCTGCAGAGGTCCATGCTCGAGAAGCAGTGGGA GCTCCCCTTCGACGACGACAACCACGCCATGGCCATCGGCTTGGCCGAGGATGACGACGA CACCAGCAAGGCCACCGTCGTCGTGGCGCGGTCCAGTGTCTCGGCGCGGCAGAGGAGGAT GAGCGGGCGGCGGCGGGGGAGGACCAAGAACGGCGCGGCGCACTTCGCCGTCAGCCCCGA GCTGATCCAGAGCAGGAACAGGATCTACCTCAGGGGCACCGTCAGCAAGGAGCTCCTCAC GCACAAGCAGGTCGTCCACCTCTCCCACAAGATCAAGGATGGCATCTGGCTGCAGCAGCA AAGATCAAAGCTGAAAGAGAAGCTGGGAAATGAGCCCTCATACAAACAGCTGGCGCATTC GCTGAAGATATCACCGCCCGAGCTACGATCAAGGATGCACGAGTCGTTTCTTGCAAGGGA GATGCTAACAATGAGCAACCTCCGTTTGGTCATTTCCATTGCCCAGAAGTATGATAACCT TGGTGTTGAGTTGGCTGACCTCATTCAGGGTGGTCTGATAGGGTTACTCCGTGGGATCGA AAAATTTGATGCATCCAGGGGCTTTAGAATTTCCACTTATGTATACTGGTGGATACGCCA GGGTGTTTCAAGAGCATTAGCTGAAAACTCAAAAACATTCAGGCTTCCAACTTATCTGCA CGAGCGGCTGATTGCGATTCGTGGTGCAAAGTATGAGTTGGAAGATCAAGGAATTGCTCC AACAATAGAAAACATAGCAGGGTCACTCAACATATCAGAAAAGAAAGTACTCAATGCTAC AGAGGCTGTGAACAAGGTTCTTTCGTTGGATCAACAAGCATTTCCATCCTTAAACGGCTT ACCTGGAGAGACACTGCACAGTTACATAGAGGATCAAAATGTCGCAAATGATCCATGGCA TGGATTTGAGGAGTGGTATCTCAAGGAAGAAGTCAACAAGCTTTTAAACTCAACTCTCAA CGAGCGTGAGAGGGACATTATCCGGTTATATCATGGCATAGGAAAACAATGCCATACATG GGAGGATATTAGCAGACAATTCGGGTTGTCGAGGGAGAGGGTGAGGCAAGTAGGACTCAT CGCAATGGAGAAGCTGAAGCATGCTGCGAGGAGGAAAAATTTGGAGGCATTGCTTGAGGA TTATTGAGTTGAGGGGCTTTTTGTTTGAGTCAGATCCACAAACACAGCGGTTGTATATAC TCAGAAAACATAGGGTACATCCTTCAAAAGGCGTACTGCCACTCACATGAAAGTAATTAT ACGTGTACATTTTGTGACATTAGGGAGATGCATGATCAAAATCTCTATGCCTGTGTTATG ACCAAGGCAATCAGGAAACAGAGAGATGATGTTTTTCCTTCAAGGTTTACAATTATTCTG TAATATATATGTAAGTATGATTTAGCTTGATCAATAGAGCAACACTTAAAAGTTCTGAGC C