Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0162200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:3677031:3679364:1 gene:Os08g0162200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0162200-01)
Sequence	ATGCCCGCCGCCGCCGGAGACGTCAACTCGACGTGGACGCTGGCCATCCGCGCCGCCGCG GACCAAGGCCGCCCACGCCGCGCCGTCGCGCTCTACCTCTCGTCCCTCCGCTCGGGCCGC CGCCCCTGCCCCTTCGCGCTCGCCGCCGTTCTCAAGTCCGTCTCCCGCCTCCTCCTCCCC GCCGCGCACCCGCTCCTCGCCGCGGCCGCGGCCTCGATCCACGCGCACCTCCTACGCCTC GGCCTCCTCGCCCACCCCTACCCGCGCGCGGCGCTCGCCCACCTCTACGCGCGCCTCCCC GATCCCTCCCGCGCGCACAGCCTGCTCGACGAAACGCCGCCCCGGCCGCCGCGGGGGCGG GCGGGGGCGCACTCCTTCCTCGTCTCACGAAACTCGCTCCTCGCCTCCCTGCTCCGTTCC GGGGACCTCGCCGCGGCGCGCGCGCTGTTCGACCGGATGCCCGTGCGGGACGTCGTGTCC TGGAACTCCATGGTCGCCGGCCTCGCCAAGGCCGGCCACCTAGACGCGGCCATCGAGCTC TTCGACAAAATGCCCGAGAGGAACGCCGCCTCCTGGAACGCGGTCATGTGCGGCTACATC GCCCAGGGCGACCTGGCCCAGGCGAGGGAGCTGTTCGAGCAAATGCCCGTGAGGAGCAAC GTCTCGTGGATCACGATGATATCCGGCTACGCCAACTCCGGCGATGTTCACGCTGCCGGC GAATTATTCGAGCGGATGGAGAACAAGAAAGATCTTTACGCGTGGAACGCGATGATCGCC TGCTACGCAAAGAATGGCTGTGCAAGGGAGGCTCTTGCTGTTTTCAATCGTATGTTGAAG CCTCATGTGTGGGTGATGCCCAATGAGAAGACCTTCTCGTCAGTCATCTCGGCTTGCTCG CAGCTTGGAGACTTGAGGTTTGGCTTGTGGGCTGAGAGTTTCATGGGGTCTGTGGGGATT GAGCTGGATGATCATTTGCGCACCGCTCTGGTGGATTTGCATACCAAGAGTGGGCGGATC GACAGAGCTTTTGATCTGTTCAGAGGTTTGGGGATGCGAGATGTGGTGTCTTACAGTGCG ATTATCGTGGGCTGTGGGATGAATGGCAAGTTCAATGAAGCTGTTAGTTTGTTCAAGGAG ATGTCCGATGCAAAGATTAGTCCCAATGCAGTGACCTTTGTGGGGTTGTTGTCTGCTTAT AGTAATGCCGGGCTAATGGAAGAAGCCCGTGCTTGCTTTGCTTCCATGACAGAAAAATAT AAGATTAGCCCTTCAATGGAACACTACACCATCATGGTAGATCTTCTTGGACGTAGTGGA AAATTGGATGAAGCATATCAACTGATCATGCAGATGCCAATGAAGCCAGATGCTAGCATT TGGGGTGCTCTACTTCTTGCTTGCAGGTTGCACAACAATGTTGAGCTTGGGGAAATTGTT GCTTCCAAGTGCTTTGAACTTGAGCCAGGAGAGAGTGGATATTATATTCTTTTGGGTAAC ATATATTCAGAAGCAAACAAATGGGAGAAAGTTAAGAGGCTAAGAAAGATAATGGCAGAA AGAGGCTTAAACAAAATGCCTGGGAGTAGTTGGGTTCAGGCTTCTTAA

Peptide Sequence

PEP ID	Os08t0162200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:3677031:3679364:1 gene:Os08g0162200 transcript:Os08t0162200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0162200-01)
Sequence	MPAAAGDVNSTWTLAIRAAADQGRPRRAVALYLSSLRSGRRPCPFALAAVLKSVSRLLLP AAHPLLAAAAASIHAHLLRLGLLAHPYPRAALAHLYARLPDPSRAHSLLDETPPRPPRGR AGAHSFLVSRNSLLASLLRSGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIEL FDKMPERNAASWNAVMCGYIAQGDLAQARELFEQMPVRSNVSWITMISGYANSGDVHAAG ELFERMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACS QLGDLRFGLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSA IIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEEARACFASMTEKY KISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLACRLHNNVELGEIV ASKCFELEPGESGYYILLGNIYSEANKWEKVKRLRKIMAERGLNKMPGSSWVQAS

Transcript Sequence

Transcript ID	Os08t0162200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:3677031:3679364:1 gene:Os08g0162200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0162200-01)
Sequence	AGTCCTTGAGTTCAAATTCAGTCACCAACTGTTCGACGGATTGCTAGTTTGCCACCATCA CCGACGCTCCCATGCCCGCCGCCGCCGGAGACGTCAACTCGACGTGGACGCTGGCCATCC GCGCCGCCGCGGACCAAGGCCGCCCACGCCGCGCCGTCGCGCTCTACCTCTCGTCCCTCC GCTCGGGCCGCCGCCCCTGCCCCTTCGCGCTCGCCGCCGTTCTCAAGTCCGTCTCCCGCC TCCTCCTCCCCGCCGCGCACCCGCTCCTCGCCGCGGCCGCGGCCTCGATCCACGCGCACC TCCTACGCCTCGGCCTCCTCGCCCACCCCTACCCGCGCGCGGCGCTCGCCCACCTCTACG CGCGCCTCCCCGATCCCTCCCGCGCGCACAGCCTGCTCGACGAAACGCCGCCCCGGCCGC CGCGGGGGCGGGCGGGGGCGCACTCCTTCCTCGTCTCACGAAACTCGCTCCTCGCCTCCC TGCTCCGTTCCGGGGACCTCGCCGCGGCGCGCGCGCTGTTCGACCGGATGCCCGTGCGGG ACGTCGTGTCCTGGAACTCCATGGTCGCCGGCCTCGCCAAGGCCGGCCACCTAGACGCGG CCATCGAGCTCTTCGACAAAATGCCCGAGAGGAACGCCGCCTCCTGGAACGCGGTCATGT GCGGCTACATCGCCCAGGGCGACCTGGCCCAGGCGAGGGAGCTGTTCGAGCAAATGCCCG TGAGGAGCAACGTCTCGTGGATCACGATGATATCCGGCTACGCCAACTCCGGCGATGTTC ACGCTGCCGGCGAATTATTCGAGCGGATGGAGAACAAGAAAGATCTTTACGCGTGGAACG CGATGATCGCCTGCTACGCAAAGAATGGCTGTGCAAGGGAGGCTCTTGCTGTTTTCAATC GTATGTTGAAGCCTCATGTGTGGGTGATGCCCAATGAGAAGACCTTCTCGTCAGTCATCT CGGCTTGCTCGCAGCTTGGAGACTTGAGGTTTGGCTTGTGGGCTGAGAGTTTCATGGGGT CTGTGGGGATTGAGCTGGATGATCATTTGCGCACCGCTCTGGTGGATTTGCATACCAAGA GTGGGCGGATCGACAGAGCTTTTGATCTGTTCAGAGGTTTGGGGATGCGAGATGTGGTGT CTTACAGTGCGATTATCGTGGGCTGTGGGATGAATGGCAAGTTCAATGAAGCTGTTAGTT TGTTCAAGGAGATGTCCGATGCAAAGATTAGTCCCAATGCAGTGACCTTTGTGGGGTTGT TGTCTGCTTATAGTAATGCCGGGCTAATGGAAGAAGCCCGTGCTTGCTTTGCTTCCATGA CAGAAAAATATAAGATTAGCCCTTCAATGGAACACTACACCATCATGGTAGATCTTCTTG GACGTAGTGGAAAATTGGATGAAGCATATCAACTGATCATGCAGATGCCAATGAAGCCAG ATGCTAGCATTTGGGGTGCTCTACTTCTTGCTTGCAGGTTGCACAACAATGTTGAGCTTG GGGAAATTGTTGCTTCCAAGTGCTTTGAACTTGAGCCAGGAGAGAGTGGATATTATATTC TTTTGGGTAACATATATTCAGAAGCAAACAAATGGGAGAAAGTTAAGAGGCTAAGAAAGA TAATGGCAGAAAGAGGCTTAAACAAAATGCCTGGGAGTAGTTGGGTTCAGGCTTCTTAAG TCCATTCTCTTGATTTCACTGATTTCGATTAATTCATTCAGTTCATAAATCAACATTCAA ATATTCCTTGCGTCAAAAAAACATTCAAATATTCAAAGCTTGACTAGTAAAATTTGACAA GAGAATGCTGGAGTCTGCTGTCTCTTGTTTGGGCAGCTTAACAAATTTATACAAGGTTCC CCCGAAACTTTGAGCATTGATCAGGAATTCCGTAATTGGTTTGTTATCATCACCCTTTGT TCAACACGTAAATCTTTCTGTTAGCTATGTAATGTGTGCGCCTTCCATAATTGATGCTAA TTTTCCATGCACATAGAAACGTTCTTTTGAAATGCTGATGAATATCTTTAATAGTTGCTT TTGGGCAAGTAGGAAAATAGCTTTGTTAAGTTGATAAATTCATGAGCTTCAAACGCATAT AACACTGATTGTTACTGCATATTGTAATTAGGATGGAATTTTTTCATTTCAAATCCACAC TAAATGTAATCACCTGTTTTCTGATGGCTTTTCTCCTTCTCACAAGAATTCTATTACAAA ACATGTGTTCATGGAATATGATAGTGAAATAAATTATGC