Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0162033-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:3636181:3638028:1 gene:Os08g0162033 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L13. (Os08t0162033-00)
Sequence

ATGGCTGCCGCGCCGCCGGCGTTCACCGGGAACCTCAAGAAAGCACTTGCAGGATTGAGA
AGGATCAATTTAGATGGGTTGAGATGGCGTGTATTTGATGCAAAGGGTCAGGTGCTTGGA
CGGTTGGCATCCCAAATTGCTGTTGTGCTTCAAGGGAAGGACAAGCCAACTTATGCACCA
CATGTGGAAAACGGGGACATGTGTGTCGTACTTAACGCGAAAGATATCAGTGTCACGGGA
AGGAAAATGACTGATAAGATTTACTACTGGCACACAGGGTATATTGGCCATTTGAAGGAA
AGAAGACTCAAGGACCAGATGGAAAAGGACCCAACCGAGGTGATTCGCAAAGCTGTGATG
CGCATGCTTCCCCGCAATAGATTGCGTGATGATAGGGATCGCAAACTGAGGATATTTTCT
GGAAGTGAGCATCCCTTCCATGATCGCCCTCTTGAACCTTTTGCGATGCCACCGCGTCAG
GTGCGCGAGATGCGCCCCCAGGCAAGACGGGCACTTATTAGGGCGCAGAAGAAAGAGCAG
GACAGAGCAGCAGCATCAACCAAAGATGACAAAGATGGTAAGAGTGCCAATACTGATGTC
ACTTCATAG

Peptide Sequence

PEP ID

Os08t0162033-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:3636181:3638028:1 gene:Os08g0162033 transcript:Os08t0162033-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L13. (Os08t0162033-00)
Sequence

MAAAPPAFTGNLKKALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAP
HVENGDMCVVLNAKDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEVIRKAVM
RMLPRNRLRDDRDRKLRIFSGSEHPFHDRPLEPFAMPPRQVREMRPQARRALIRAQKKEQ
DRAAASTKDDKDGKSANTDVTS

Transcript Sequence

Transcript ID

Os08t0162033-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:3636181:3638028:1 gene:Os08g0162033 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L13. (Os08t0162033-00)
Sequence

GTCCTCCGGGAACAAGAGGTGCGCGCACTGTCGTCGCCGCCTCCGACTCCGACGACGACG
AACAACTCCGCCACGTCGGATTTGGCATGGCTGCCGCGCCGCCGGCGTTCACCGGGAACC
TCAAGAAAGCACTTGCAGGATTGAGAAGGATCAATTTAGATGGGTTGAGATGGCGTGTAT
TTGATGCAAAGGGTCAGGTGCTTGGACGGTTGGCATCCCAAATTGCTGTTGTGCTTCAAG
GGAAGGACAAGCCAACTTATGCACCACATGTGGAAAACGGGGACATGTGTGTCGTACTTA
ACGCGAAAGATATCAGTGTCACGGGAAGGAAAATGACTGATAAGATTTACTACTGGCACA
CAGGGTATATTGGCCATTTGAAGGAAAGAAGACTCAAGGACCAGATGGAAAAGGACCCAA
CCGAGGTGATTCGCAAAGCTGTGATGCGCATGCTTCCCCGCAATAGATTGCGTGATGATA
GGGATCGCAAACTGAGGATATTTTCTGGAAGTGAGCATCCCTTCCATGATCGCCCTCTTG
AACCTTTTGCGATGCCACCGCGTCAGGTGCGCGAGATGCGCCCCCAGGCAAGACGGGCAC
TTATTAGGGCGCAGAAGAAAGAGCAGGACAGAGCAGCAGCATCAACCAAAGATGACAAAG
ATGGTAAGAGTGCCAATACTGATGTCACTTCATAGGC