Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0157600-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:3372020:3373384:1 gene:Os08g0157600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CIRCADIAN CLOCK ASSOCIATED 1 description:MYB transcription factor, Circadian clock (Os08t0157600-01);Similar to LHY protein. (Os08t0157600-02);Similar to LHY protein. (Os08t0157600-03)
Sequence	GTAGACGGCAATACTCCTGATCCAAATCAAGAAAATCTTTCTGAGAGTGCTCAAGGAAGC CACGCTGGCTCTCCTCCCAACATGGCATCTATTGTCACAGCTACAGTTGCTGCAGCATCA GCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTCCTCCACCTATAGCTTTTCCATTT GTTCCAGCTCCTAGTGCTCCCTTTTCCACAGCAGATGTTCAGCGAGCTCAAGAGAAAGAT ATAGACTGCCCAATGGATAATGCACAGAAGGAATTGCAAGAAACTCGGAAACAAGATAAT TTTGAAGCTATGAAGGTCATAGTGTCTTCAGAGACTGATGAGAGTGGAAAAGGAGAAGTG TCGCTCCACACTGAGTTAAAGATATCTCCAGCAGATAAGGCCGACACCAAACCTGCCGCA GGAGCTGAAACAAGTGACGTTTTTGGAAATAAGAAAAAGCAGGATCGCTCTTCATGTGGT TCCAACACACCGTCAAGTAGTGATATAGAAGCAGATAATGCTCCTGAGAATCAAGAAAAG GCTAACGACAAGGCAAAGCAAGCATCTTGCAGTAACTCTTCAGCCGGTGACAATAACCAC CGTAGATTTAGGAGCAGTGCAAGCACAAGTGATTCATGGAAGGAAGTTTCTGAAGAGGGT CGTCTGGCTTTTGATGCACTGTTCAGTAGAGAAAGGCTTCCCCAAAGCTTTTCTCCTCCG CAAGTAGAAGGATCAAAGGAGATTAGCAAGGAGGAAGAAGATGAAGTAACCACGGTGACG GTTGACCTCAACAAGAATGCCGCTATTATTGATCAAGAACTCGACACAGCGGATGAGCCA AGAGCTTCCTTTCCTAATGAATTGTCAAACCTGAAGCTGAAATCTCGCAGGACCGGTTTC AAACCATACAAGAGGTGCTCAGTGGAAGCGAAGGAGAACAGGGTACCGGCTAGCGATGAG GTTGGTACCAAGAGGATTCGTCTTGAGAGCGAAGCATCGACATGA

Peptide Sequence

PEP ID	Os08t0157600-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:3372020:3373384:1 gene:Os08g0157600 transcript:Os08t0157600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CIRCADIAN CLOCK ASSOCIATED 1 description:MYB transcription factor, Circadian clock (Os08t0157600-01);Similar to LHY protein. (Os08t0157600-02);Similar to LHY protein. (Os08t0157600-03)
Sequence	VDGNTPDPNQENLSESAQGSHAGSPPNMASIVTATVAAASAWWATQGLLPLFPPPIAFPF VPAPSAPFSTADVQRAQEKDIDCPMDNAQKELQETRKQDNFEAMKVIVSSETDESGKGEV SLHTELKISPADKADTKPAAGAETSDVFGNKKKQDRSSCGSNTPSSSDIEADNAPENQEK ANDKAKQASCSNSSAGDNNHRRFRSSASTSDSWKEVSEEGRLAFDALFSRERLPQSFSPP QVEGSKEISKEEEDEVTTVTVDLNKNAAIIDQELDTADEPRASFPNELSNLKLKSRRTGF KPYKRCSVEAKENRVPASDEVGTKRIRLESEAST

Transcript Sequence

Transcript ID	Os08t0157600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:3372020:3373384:1 gene:Os08g0157600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CIRCADIAN CLOCK ASSOCIATED 1 description:MYB transcription factor, Circadian clock (Os08t0157600-01);Similar to LHY protein. (Os08t0157600-02);Similar to LHY protein. (Os08t0157600-03)
Sequence	CAGTAGACGGCAATACTCCTGATCCAAATCAAGAAAATCTTTCTGAGAGTGCTCAAGGAA GCCACGCTGGCTCTCCTCCCAACATGGCATCTATTGTCACAGCTACAGTTGCTGCAGCAT CAGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTCCTCCACCTATAGCTTTTCCAT TTGTTCCAGCTCCTAGTGCTCCCTTTTCCACAGCAGATGTTCAGCGAGCTCAAGAGAAAG ATATAGACTGCCCAATGGATAATGCACAGAAGGAATTGCAAGAAACTCGGAAACAAGATA ATTTTGAAGCTATGAAGGTCATAGTGTCTTCAGAGACTGATGAGAGTGGAAAAGGAGAAG TGTCGCTCCACACTGAGTTAAAGATATCTCCAGCAGATAAGGCCGACACCAAACCTGCCG CAGGAGCTGAAACAAGTGACGTTTTTGGAAATAAGAAAAAGCAGGATCGCTCTTCATGTG GTTCCAACACACCGTCAAGTAGTGATATAGAAGCAGATAATGCTCCTGAGAATCAAGAAA AGGCTAACGACAAGGCAAAGCAAGCATCTTGCAGTAACTCTTCAGCCGGTGACAATAACC ACCGTAGATTTAGGAGCAGTGCAAGCACAAGTGATTCATGGAAGGAAGTTTCTGAAGAGG GTCGTCTGGCTTTTGATGCACTGTTCAGTAGAGAAAGGCTTCCCCAAAGCTTTTCTCCTC CGCAAGTAGAAGGATCAAAGGAGATTAGCAAGGAGGAAGAAGATGAAGTAACCACGGTGA CGGTTGACCTCAACAAGAATGCCGCTATTATTGATCAAGAACTCGACACAGCGGATGAGC CAAGAGCTTCCTTTCCTAATGAATTGTCAAACCTGAAGCTGAAATCTCGCAGGACCGGTT TCAAACCATACAAGAGGTGCTCAGTGGAAGCGAAGGAGAACAGGGTACCGGCTAGCGATG AGGTTGGTACCAAGAGGATTCGTCTTGAGAGCGAAGCATCGACATGATTTGCTTTCCACC TGGTTGCTGGCCTCTACCAAGTCAGAAGTTAAATTTACATCCGAGCTACCATAGGACTTC AGACCTTCCAATGCATTACCTCACAAACTCAATTTATTGTGTGTTGTATCTTAATGCTTG CCAAGCAGCTCCTATAGACTGCTTTTAAACCGTATCTCATAGACTTTTGATTAGCATTTA AGCGACTGCTAAACTTTCTTCATAAAAGGGTATTATCCTTATTATGCATTATAGTCTGGG GAAGGTAATAAGTGG