Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0154600-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:3136760:3142805:1 gene:Os08g0154600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DNA topoisomerase 1 description:DNA Topoisomerase 1, Modulation of auxin-regulated root development and gravitropism (Os08t0154600-01)
Sequence	ATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTC AAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCA GGGAATGCCGGACCTATTAGGAGCCCTAAGGCTGTTGCTTCCAATCAACAGAAGAATGGG CTGACTGGTGTTTCGAGGCCTTTGCAACAGAGGCCGCAGTCAAGCAGTCCAAACCCTCGA CCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCA GTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGAT GACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCT GTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAAC TCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAA ATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTGCCAACT AATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTG GCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGAC AAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCG AGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCT CTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAG GCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAA AGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAAC AAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAG ACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGT GGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATGCTTTACAACGGGCAA CCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCATGTTTGCTGTGATGAAAGAC ACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATT CTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAA TGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTG AAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAA GAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCAT CCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGA AAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACAC GACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAG TATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAG AAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTC AGAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTA GCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACA CTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGT AAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATT GAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACC AGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACA TATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTT CTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCAT CAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGAT GAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGACTTGAGCAAAGTAAGGAAAGGAAAG AATCTAGGCAATGACAAAGATGGGAAACCAAAAAGAAATTTGGCCCCTGAAGCGTTTGAA AAGAAGATATCTCAGATTGAAACCAAGATAGAGAAGATGGAGATGGATAAGAAGATTAAA GAGGATTTAAAGACAGTGGCACTAGGAACTTCAAAGATCAATTACCTTGATCCCAGAATT ACTGTTGCATGGTGCAAACGCCATGAAGTACCCATCGAGAAGATTTTCAACAAATCACTC ATTGCGAAATTTTCGTGGGCAATGGACGTCGACCCGGATTTCAGATTTTAA

Peptide Sequence

PEP ID	Os08t0154600-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:3136760:3142805:1 gene:Os08g0154600 transcript:Os08t0154600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DNA topoisomerase 1 description:DNA Topoisomerase 1, Modulation of auxin-regulated root development and gravitropism (Os08t0154600-01)
Sequence	MAVVDPVMFDNDDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNG LTGVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSED DHKPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPK IEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNASASISSSKD KVLSASIKASSSSKMSNNDASTSRNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPK ADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSK TMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKD TDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKAL KEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIG KGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYE KSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCT LKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTT RLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNH QRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFE KKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL IAKFSWAMDVDPDFRF

Transcript Sequence

Transcript ID	Os08t0154600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:3136760:3142805:1 gene:Os08g0154600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DNA topoisomerase 1 description:DNA Topoisomerase 1, Modulation of auxin-regulated root development and gravitropism (Os08t0154600-01)
Sequence	AAGGCGAGAGAGGGAGGGAGAGGAGTCGGAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAG CGAGCGATAGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAGACACAGATAAGCTC AGCCCTAACCCTAGCTCCCCGCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCC CGGGGAGCGGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCC GTCTGCCAGCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAA CGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCC CACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAGCCCTAAGGC TGTTGCTTCCAATCAACAGAAGAATGGGCTGACTGGTGTTTCGAGGCCTTTGCAACAGAG GCCGCAGTCAAGCAGTCCAAACCCTCGACCTTTGGGATCAGGTCAGCCGAACAGTTCCAA AGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGT GGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGT CGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGA TGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAA GGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGA TAAACCACTGGCCAGCAGGTTGCCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTC TGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGC ATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTC TTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAAT TGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGC GTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACA AAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAA GAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAA AACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGG ACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCA TGGTGTCAAGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGT TGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGA CAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGA GCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCA GATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTA CATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACC TGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAA ACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACC TGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAA TGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAA GGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAA AATTCGTGACACTTACACAAAGGATTTCAGAAGCAAAGATAAGACAAAGAAACAAATTGC AGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGA TGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCC AAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGA GGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACA AGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCC TGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTT GCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAA CAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCA GATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGC AGACTTGAGCAAAGTAAGGAAAGGAAAGAATCTAGGCAATGACAAAGATGGGAAACCAAA AAGAAATTTGGCCCCTGAAGCGTTTGAAAAGAAGATATCTCAGATTGAAACCAAGATAGA GAAGATGGAGATGGATAAGAAGATTAAAGAGGATTTAAAGACAGTGGCACTAGGAACTTC AAAGATCAATTACCTTGATCCCAGAATTACTGTTGCATGGTGCAAACGCCATGAAGTACC CATCGAGAAGATTTTCAACAAATCACTCATTGCGAAATTTTCGTGGGCAATGGACGTCGA CCCGGATTTCAGATTTTAAGAGGGTACAAGAGCATTGGCTACTGGTCATCCGGCCTGTAG TAAAGTTGATCCAGCTTCCAGTCCTTGTCCCGGACACTAATTTGCAGCTAGGAAAGGAAG AGCTCGGTGTTTGTTTTTGAAGTCCCCTGCTCCTGGAAAGAAGGAAGCACCCGGCATTCT CATTGTAGGCTTTTTTTTTCTTTTACTACTTGTTGGTGCCTTTGCCATCGGTCCTCAAGT TCTGTATGCATTTGGGCTGAGGAATTTTAGCTCGCTGAGAACGAATGGACATTCATTTTA TACCGAATTAATCTCAAATATACCATGAGGTTTCGTTTGGTTGCGG