Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0143400-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:2385537:2389276:-1 gene:Os08g0143400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Heading date 18, SWIRM domain-containing protein HDMA703 description:SWIRM and amine oxidase domain-containing protein, Homolog of Arabidopsis FLOWERING LOCUS D (FLD), Control of flowering time (Os08t0143400-01);Similar to cDNA clone:J013128B21, full insert sequence. (Os08t0143400-02)
Sequence	ATGTCGTCGTCGTCGCGGCGGCCGGCGAGGAGGGCGGCGTTGACGGCGAGGTCGTCGTAC GACGAGTCGCTGGTGGACGCCGAGCTGGAGTCCTACCTCGGGAACGCCAGGTCGCGGCGG ATCAGCCGGCTGCGCCGCCTCTCCGCCGACGAGCGGCAGCGGGAGACGGAGACGGAGGCG CTAATAGCGCTCTCGCTGGGCTTCCCCATTGACGAGCTGCTCCCCGCCGAGCGGCCCCTC CTGCCGGCCCCCGTCGCCGCCGCCCCCAACGACTACATCGTCGTCCGCAACCACATCCTC GCCTCGTGGCGCGCCGACCCGCGGGTGCCGCTCCCGCGCTCGCGCGTGCAGGAGACCGTC GCCGCCAGCTACGACAACCTTGTCGCCGTGGCGCACGGGTTCCTCGCCCGGGAGGGCCAC ATCAACTTCGGCGTCTCCGCCGCGTTCCCCGCCTCCCCACCACCCGATGCGCCGCAGCGC CTCGCCGCATCCGTGCTCGTCGTCGGCGCCGGTCTCGCCGGCCTCGCCGCCGCGCGCCAG CTGCTCCGATTCGGCCTCCGCGTGCTCGTCCTCGAGGGCCGCGCCCGCCCCGGCGGCCGC GTCTACACCACTCATCTCGGCGGGGACCAGGCCGCCGTTGAGCTCGGCGGCAGCGTCATC ACCGGCATCCACACCAACCCGCTCGGCGTGCTCGCCAGGCAGCTCGGGATTCCACTCCAC AAGGTGCGAGACAGTTGCCCGCTCTACCACCACGACGGCCGCACCGTGGACATGAAGCTG GACAGGAGCATGGATCTGGTGTTCAACACGCTTCTAGAACACGCCACCCGGCTGCGAGAG TATCTCAAGAAGGCAGCCGAGGGGATCTCGCTAGGGGAAGGTATAGAGAGGCTGAGACGC TTTTACAAGGTGGCGAAAAGCGTCGAGGAGAGGGAGGTTCTGGACTGGCATTTGGCTAAC CTGGAATTCTCCAATGCCGGCTGCCTATCGGAGCTCTCGCTCGCGCACTGGGACCAGGAT GACCAGTATGAGATGGGGGGAGACCATTGCTTCCTAGCCGGAGGGAATGCGAGGCTGGTA CACGCATTGTGCGATGGTGTGCCGGTGTTGTATGAGAAGACGGTGAAGCGGATTGAGCAT GGGGAGGATGGGGTGAGCATCACCGTGGAAGGAGGCCAGGTTTTCAAGGCTGACATGGCA CTCTGCACTGCTCCACTTGGAGTGCTCAAGAGCAGGAGCATCATTTTTGAACCGGAGTTG CCAGAGAGGAAGCTTGAAGCAATCCAGAGGTTGGGGTTTGGGTTGTTGAACAAAGTCGCC ATGGTGTTTCCCCATGTATTTTGGGATGAGGAGATTGACACATTTGGGTGTTTGAATAAG GAGAGGAGCAAGCGTGGCGAGTTCTTTCTCTTCTACAGCTACCACACTGTCTCTGGTGGT GCGGTACTTATCGCACTTGTTGCGGGAGAAGCTGCTTTGGAGTTTGAAAAGGTTGATCCT GCTGTAGCACTTCATAGGGTCCTTGGTATTCTTAAAGGTATCTATGGCCCCAAAGGTGTT ACAGTGCCTGATCCCATTCAATCATGTTGCACAAGATGGGGTAGTGATCCTCTTTGCTCA GGTTCATACTCTCACATCAGAGTTGGGTCTTCTGGCACTGACTATGATATTCTCGCTGAG AGCGTCAATGACCGGTTATTCTTTGCTGGAGAAGCAACAAATCGTGCATACCCTGCAACA ATGCATGGAGCTTTATTGAGTGGACTAAGGGAAGCTTCCAAGATTCTCCATGCTTCGGAA AGTAGATTGAATTCTGATTATAAGAAGTATGCCCTGCAGAAAAGCATCAGACTTATAAAT AATGTACTGGACGACCTTTTCATGGAGCCAGATCTAGAATGTGGAAGATTCTCGTTCGTG TTCTCCTATATTACACCTGAGGAGGAACAGGCTCCGGGATTGGCTAGGATTACACTTGAG AAGCCTTTGCTTCTGCCTTCCAAGAAACGCAAAGTAAAGGGTAATCAGAAGGATCAGGAC CCTGTGGCTGAGAAGATAGACCAAGAGGTGTTTTATTTATACGCCACCGTCTCGCAAGAG CAAGCAACTGAACTATTGGAATGCGACAATGATAAAAGTAGGATAGCAGTTCTATGCAAA GATCTTGGTGTTAAACTAATGGGTTACGACAGTACATACGATGTATGTAGTCATCTGATT TCTAGCATCTCGAGAGCTCAGAAAGCCAGGAAAAGGTTGCAGGGACCGAAGAGCTTGAAA ACCGGACTTTGA

Peptide Sequence

PEP ID	Os08t0143400-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:2385537:2389276:-1 gene:Os08g0143400 transcript:Os08t0143400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Heading date 18, SWIRM domain-containing protein HDMA703 description:SWIRM and amine oxidase domain-containing protein, Homolog of Arabidopsis FLOWERING LOCUS D (FLD), Control of flowering time (Os08t0143400-01);Similar to cDNA clone:J013128B21, full insert sequence. (Os08t0143400-02)
Sequence	MSSSSRRPARRAALTARSSYDESLVDAELESYLGNARSRRISRLRRLSADERQRETETEA LIALSLGFPIDELLPAERPLLPAPVAAAPNDYIVVRNHILASWRADPRVPLPRSRVQETV AASYDNLVAVAHGFLAREGHINFGVSAAFPASPPPDAPQRLAASVLVVGAGLAGLAAARQ LLRFGLRVLVLEGRARPGGRVYTTHLGGDQAAVELGGSVITGIHTNPLGVLARQLGIPLH KVRDSCPLYHHDGRTVDMKLDRSMDLVFNTLLEHATRLREYLKKAAEGISLGEGIERLRR FYKVAKSVEEREVLDWHLANLEFSNAGCLSELSLAHWDQDDQYEMGGDHCFLAGGNARLV HALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPEL PERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGG AVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPDPIQSCCTRWGSDPLCS GSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREASKILHASE SRLNSDYKKYALQKSIRLINNVLDDLFMEPDLECGRFSFVFSYITPEEEQAPGLARITLE KPLLLPSKKRKVKGNQKDQDPVAEKIDQEVFYLYATVSQEQATELLECDNDKSRIAVLCK DLGVKLMGYDSTYDVCSHLISSISRAQKARKRLQGPKSLKTGL

Transcript Sequence

Transcript ID	Os08t0143400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:2385537:2389276:-1 gene:Os08g0143400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Heading date 18, SWIRM domain-containing protein HDMA703 description:SWIRM and amine oxidase domain-containing protein, Homolog of Arabidopsis FLOWERING LOCUS D (FLD), Control of flowering time (Os08t0143400-01);Similar to cDNA clone:J013128B21, full insert sequence. (Os08t0143400-02)
Sequence	TCTCCCCTCGCCTCCGCGAAGCGAGAGAAACCCCAACCTCGTCGGCGGCGATGTCGTCGT CGTCGCGGCGGCCGGCGAGGAGGGCGGCGTTGACGGCGAGGTCGTCGTACGACGAGTCGC TGGTGGACGCCGAGCTGGAGTCCTACCTCGGGAACGCCAGGTCGCGGCGGATCAGCCGGC TGCGCCGCCTCTCCGCCGACGAGCGGCAGCGGGAGACGGAGACGGAGGCGCTAATAGCGC TCTCGCTGGGCTTCCCCATTGACGAGCTGCTCCCCGCCGAGCGGCCCCTCCTGCCGGCCC CCGTCGCCGCCGCCCCCAACGACTACATCGTCGTCCGCAACCACATCCTCGCCTCGTGGC GCGCCGACCCGCGGGTGCCGCTCCCGCGCTCGCGCGTGCAGGAGACCGTCGCCGCCAGCT ACGACAACCTTGTCGCCGTGGCGCACGGGTTCCTCGCCCGGGAGGGCCACATCAACTTCG GCGTCTCCGCCGCGTTCCCCGCCTCCCCACCACCCGATGCGCCGCAGCGCCTCGCCGCAT CCGTGCTCGTCGTCGGCGCCGGTCTCGCCGGCCTCGCCGCCGCGCGCCAGCTGCTCCGAT TCGGCCTCCGCGTGCTCGTCCTCGAGGGCCGCGCCCGCCCCGGCGGCCGCGTCTACACCA CTCATCTCGGCGGGGACCAGGCCGCCGTTGAGCTCGGCGGCAGCGTCATCACCGGCATCC ACACCAACCCGCTCGGCGTGCTCGCCAGGCAGCTCGGGATTCCACTCCACAAGGTGCGAG ACAGTTGCCCGCTCTACCACCACGACGGCCGCACCGTGGACATGAAGCTGGACAGGAGCA TGGATCTGGTGTTCAACACGCTTCTAGAACACGCCACCCGGCTGCGAGAGTATCTCAAGA AGGCAGCCGAGGGGATCTCGCTAGGGGAAGGTATAGAGAGGCTGAGACGCTTTTACAAGG TGGCGAAAAGCGTCGAGGAGAGGGAGGTTCTGGACTGGCATTTGGCTAACCTGGAATTCT CCAATGCCGGCTGCCTATCGGAGCTCTCGCTCGCGCACTGGGACCAGGATGACCAGTATG AGATGGGGGGAGACCATTGCTTCCTAGCCGGAGGGAATGCGAGGCTGGTACACGCATTGT GCGATGGTGTGCCGGTGTTGTATGAGAAGACGGTGAAGCGGATTGAGCATGGGGAGGATG GGGTGAGCATCACCGTGGAAGGAGGCCAGGTTTTCAAGGCTGACATGGCACTCTGCACTG CTCCACTTGGAGTGCTCAAGAGCAGGAGCATCATTTTTGAACCGGAGTTGCCAGAGAGGA AGCTTGAAGCAATCCAGAGGTTGGGGTTTGGGTTGTTGAACAAAGTCGCCATGGTGTTTC CCCATGTATTTTGGGATGAGGAGATTGACACATTTGGGTGTTTGAATAAGGAGAGGAGCA AGCGTGGCGAGTTCTTTCTCTTCTACAGCTACCACACTGTCTCTGGTGGTGCGGTACTTA TCGCACTTGTTGCGGGAGAAGCTGCTTTGGAGTTTGAAAAGGTTGATCCTGCTGTAGCAC TTCATAGGGTCCTTGGTATTCTTAAAGGTATCTATGGCCCCAAAGGTGTTACAGTGCCTG ATCCCATTCAATCATGTTGCACAAGATGGGGTAGTGATCCTCTTTGCTCAGGTTCATACT CTCACATCAGAGTTGGGTCTTCTGGCACTGACTATGATATTCTCGCTGAGAGCGTCAATG ACCGGTTATTCTTTGCTGGAGAAGCAACAAATCGTGCATACCCTGCAACAATGCATGGAG CTTTATTGAGTGGACTAAGGGAAGCTTCCAAGATTCTCCATGCTTCGGAAAGTAGATTGA ATTCTGATTATAAGAAGTATGCCCTGCAGAAAAGCATCAGACTTATAAATAATGTACTGG ACGACCTTTTCATGGAGCCAGATCTAGAATGTGGAAGATTCTCGTTCGTGTTCTCCTATA TTACACCTGAGGAGGAACAGGCTCCGGGATTGGCTAGGATTACACTTGAGAAGCCTTTGC TTCTGCCTTCCAAGAAACGCAAAGTAAAGGGTAATCAGAAGGATCAGGACCCTGTGGCTG AGAAGATAGACCAAGAGGTGTTTTATTTATACGCCACCGTCTCGCAAGAGCAAGCAACTG AACTATTGGAATGCGACAATGATAAAAGTAGGATAGCAGTTCTATGCAAAGATCTTGGTG TTAAACTAATGGGTTACGACAGTACATACGATGTATGTAGTCATCTGATTTCTAGCATCT CGAGAGCTCAGAAAGCCAGGAAAAGGTTGCAGGGACCGAAGAGCTTGAAAACCGGACTTT GATCTGTACCGCTACTTTATTCTTGTTTGTAGAAAAGAACCCCATATTTTCTCTTTTGGT TTGGGCCAAAAACTGGCTCATAGATTGTTCTCTAGTGTGCAAACTTTAGACGTGGGGCAG GAAAACCAAGATCCTCCCTGCCATTTGTAACATGGCAGTCATCAGTCATCTGGCCTCCCT CAGTAGATTAGAACTTAGATGCACTGATAAATTTCAATGAATAGTTTGGTTGCAGGTACT ATTGGATTCTTTTAGGGAGGCTACTATTGTTTTCATCTTCCCCCTTTTTTTTCTAGATGT TGTTCCTATATTGGTATCTGGCAGTTTATGTGTTGCTGAAATGGTGGATAAGCTCACTTC TGGACCAGTTTGTTTGGCT