Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0143150-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:2373797:2374447:-1 gene:Os08g0143150 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retrotransposon protein. (Os08t0143150-00)
Sequence

ATGGTCAAACCCATCGGCTCTCTCGCCATCGCCGCCGTCGTCCCGCTCCTCGCCGCCCTG
TGCCTCGTCTCCTGCACCGGCGGCGACGCCCGGTGGTGCGCTCCCGTCCCGTCGATGACC
GTCGAGCAGGCGTGCGACGCGGTGTGCGGCACGGCGCACATGCTCAAGCTCTGCCTCCGC
ACGCTCCAGCCGCGCGCGCGCCGCGGCGGCGGCGAGCACCGGCGCCGTCGGGACGACGCC
GTCACGCGCTACGTCGGCGCGGCCGCGCGCGGCGCGCTCGACGCGTACGCCGCCACGGCG
GCGGCGAAGCGGGGGATGCAGTACAGCGCCGCGCTGCCCGCCGAGGAGAGGACGGCGCAC
GAGCGGTGCATGGCCGGGTACGACCTCGCCGTGCGCTTCATGGGCCGCGTCGCCGGCGAC
CTGGCGAGCTGCGAGACGGCGGCGGCGCGCCTGAGGGACGACTGCGACGGCAGCCTCGCC
GGCATGGACGCGTGCAGGAGGAAGCTGTTCGGCTACCCGGCGTCGCCGCTGTACGGCCGG
AACCTCGCCGACCGAAACAAGACCATGCTCGTCGGCTTGCTCTCGAACCTCGTGCCGATG
CCGACACCGCCGCCGCCGCCGACGCCGTCGCCGTAG

Peptide Sequence

PEP ID

Os08t0143150-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:2373797:2374447:-1 gene:Os08g0143150 transcript:Os08t0143150-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retrotransposon protein. (Os08t0143150-00)
Sequence

MVKPIGSLAIAAVVPLLAALCLVSCTGGDARWCAPVPSMTVEQACDAVCGTAHMLKLCLR
TLQPRARRGGGEHRRRRDDAVTRYVGAAARGALDAYAATAAAKRGMQYSAALPAEERTAH
ERCMAGYDLAVRFMGRVAGDLASCETAAARLRDDCDGSLAGMDACRRKLFGYPASPLYGR
NLADRNKTMLVGLLSNLVPMPTPPPPPTPSP

Transcript Sequence

Transcript ID

Os08t0143150-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:2373797:2374447:-1 gene:Os08g0143150 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retrotransposon protein. (Os08t0143150-00)
Sequence

CCAATCAAGAACACCATGGTCAAACCCATCGGCTCTCTCGCCATCGCCGCCGTCGTCCCG
CTCCTCGCCGCCCTGTGCCTCGTCTCCTGCACCGGCGGCGACGCCCGGTGGTGCGCTCCC
GTCCCGTCGATGACCGTCGAGCAGGCGTGCGACGCGGTGTGCGGCACGGCGCACATGCTC
AAGCTCTGCCTCCGCACGCTCCAGCCGCGCGCGCGCCGCGGCGGCGGCGAGCACCGGCGC
CGTCGGGACGACGCCGTCACGCGCTACGTCGGCGCGGCCGCGCGCGGCGCGCTCGACGCG
TACGCCGCCACGGCGGCGGCGAAGCGGGGGATGCAGTACAGCGCCGCGCTGCCCGCCGAG
GAGAGGACGGCGCACGAGCGGTGCATGGCCGGGTACGACCTCGCCGTGCGCTTCATGGGC
CGCGTCGCCGGCGACCTGGCGAGCTGCGAGACGGCGGCGGCGCGCCTGAGGGACGACTGC
GACGGCAGCCTCGCCGGCATGGACGCGTGCAGGAGGAAGCTGTTCGGCTACCCGGCGTCG
CCGCTGTACGGCCGGAACCTCGCCGACCGAAACAAGACCATGCTCGTCGGCTTGCTCTCG
AACCTCGTGCCGATGCCGACACCGCCGCCGCCGCCGACGCCGTCGCCGTAG