Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0142500-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:2344052:2344747:-1 gene:Os08g0142500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os08t0142500-01)
Sequence

GAGTACTTCGTCGTGAACACCATGAACACTATTCCCCTTCCTCTCAGGCTACTCGTCGCC
GTCTCCCTCGCCGTCGCCGGCGTCGCCGGAGATGACGAGAAGACGTGCCCCGGCGCGCCG
ACGATGACGGTGGAGTCGGCGTGCCGCAACGTGAGCGGCACGCAGGCGATGTACGACACG
TGCAGGGACGCGCTCGCCGGCGTGGCGGACCCGTTGAGCGACCACGACGTGACCGTCTAC
GCGCTCGCGGCGGCGCACGGCGCGGCGGCGTCGGCGGAGGCCACCATGGGCGCCGCCATC
GACGAGGTCAGGAACAACAGGTCTCTCCCCGGCGACGAGAGGGACGCGTACATGGAGTGC
GCGGTGGACTACTCGACGGCGCTGCACGCCATGGGCAGCGTCGTGGACAAGCTCGACGGC
TGCAGCTTCGACGGCCTCGCCGGCGACTATTTGAACGGGCTCATCGACGTCGAGAACTGC
AGGGACCGCGTGCTCAAGCTGCCGGCGTCGCCGCTGTACGCCATGGTGCTCGTCGACCGG
AACAAGGCCGGGATGGCTCTCTTCCTGGGGAAACTCTTGGGGATATGA

Peptide Sequence

PEP ID

Os08t0142500-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:2344052:2344747:-1 gene:Os08g0142500 transcript:Os08t0142500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os08t0142500-01)
Sequence

EYFVVNTMNTIPLPLRLLVAVSLAVAGVAGDDEKTCPGAPTMTVESACRNVSGTQAMYDT
CRDALAGVADPLSDHDVTVYALAAAHGAAASAEATMGAAIDEVRNNRSLPGDERDAYMEC
AVDYSTALHAMGSVVDKLDGCSFDGLAGDYLNGLIDVENCRDRVLKLPASPLYAMVLVDR
NKAGMALFLGKLLGI

Transcript Sequence

Transcript ID

Os08t0142500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:2344052:2344747:-1 gene:Os08g0142500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os08t0142500-01)
Sequence

AGTACACCATTTCTTCTTCTTTTCAGTATATTTCTCTAGGAGTACTTCGTCGTGAACACC
ATGAACACTATTCCCCTTCCTCTCAGGCTACTCGTCGCCGTCTCCCTCGCCGTCGCCGGC
GTCGCCGGAGATGACGAGAAGACGTGCCCCGGCGCGCCGACGATGACGGTGGAGTCGGCG
TGCCGCAACGTGAGCGGCACGCAGGCGATGTACGACACGTGCAGGGACGCGCTCGCCGGC
GTGGCGGACCCGTTGAGCGACCACGACGTGACCGTCTACGCGCTCGCGGCGGCGCACGGC
GCGGCGGCGTCGGCGGAGGCCACCATGGGCGCCGCCATCGACGAGGTCAGGAACAACAGG
TCTCTCCCCGGCGACGAGAGGGACGCGTACATGGAGTGCGCGGTGGACTACTCGACGGCG
CTGCACGCCATGGGCAGCGTCGTGGACAAGCTCGACGGCTGCAGCTTCGACGGCCTCGCC
GGCGACTATTTGAACGGGCTCATCGACGTCGAGAACTGCAGGGACCGCGTGCTCAAGCTG
CCGGCGTCGCCGCTGTACGCCATGGTGCTCGTCGACCGGAACAAGGCCGGGATGGCTCTC
TTCCTGGGGAAACTCTTGGGGATATGATGATAACAAAATTGCTTAATTAAACCAATGTGT
GGCTAAAGTCAAATATCAAATGAATTAATATTATCC