Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0137100-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:2077234:2083272:1 gene:Os08g0137100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FERTILIZATION-INDEPENDENT ENDOSPERM 2 description:WD40 Polycomb protein of the PRC2 complex, Regulation of vegetative and reproductive development (Os08t0137100-01)
Sequence

ATGGCGAAGCTGGGGCCGGGGCAGGGGCTGGGGTGCGAGGCGGCGGTGGGGTTGCTGGCG
CCAAGCAGGAAGAGGGAGTACAAGGCGTGCAACAAGCTCACCGAGGGGAAGCGGCCGCTC
TACGCCATCGGATTCAACTTCCTCGACTTCCACTACTACGAGGTCTTCGCCACCGTCGGC
GGCAACCGCGTGACAACCTACAGCTGCCTCAAGGATGGTAATTTTGCTATCCTGCAAGCA
TATATTGATGAGGATAAGGATGAATCGTTCTACACACTGAGTTGGGCTTGTGATCTTGAT
GGCACACCGCTGTTAGTGGCTGCAGGAAGCAATGGGATCATTCGGGTCATCAACTGTGCC
ACTGAGAAGTTACTCAAGACTTTTGTTGGCCATGGCGATTCAATAAACGAGATAAGAACT
CAAGCATTAAAGCCTTCGCTCATCATTTCTGCAAGCAAGGATGAATCTGTTAGGCTGTGG
AATGTTCACACAGGGATCTGCATTTTGATTTTTGCTGGAGCAGGAGGTCACCGGAATGAA
GTATTGAGTGTTGACTTCCACCCATCTGATATCTACCGCATAGCAAGTTGTGGCATGGAT
AACACTGTTAAAATATGGTCAATGAAGGAATTCTGGCCATATGTTGAGCAATCCTTTACA
TGGACTGACCTTCCATCAAAATTTCCAACAAAATATGTGCAATTTCCGGTCTTGGTTGCT
GTAGTACATTCTAACTATGTTGATTGTACTAGATGGCTTGGTGACTTCATTCTGTCAAAG
AGTGTTGACAATGAAATTGTGCTGTGGGAGCCAAAAACAAAAGAACAAAGTCCCGGGGAG
GGTAGCATTGATATTCTTCAGAAGTATCCTGTGCCAGAATGTGATATCTGGTTTATCAAA
TTCTCATGCGATTTTCACTTCAATCAATTGGCAATAGGCAACCGTGAAGGAAAAGTCTTT
GTCTGGGAAGTACAGTCCAGTCCTCCTGTTTTAACTGCTCGGCTGACTAATCCGCAATGC
AAATCTGCGATAAGGCAGACTGCCGTGTCATTTGATGGAAGCACAATCCTTGCCTGCAGC
GAGGATGGCAGCATATGGCGATGGGATGAAGTGGACCATCCAAAAGCATGA

Peptide Sequence

PEP ID

Os08t0137100-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:2077234:2083272:1 gene:Os08g0137100 transcript:Os08t0137100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FERTILIZATION-INDEPENDENT ENDOSPERM 2 description:WD40 Polycomb protein of the PRC2 complex, Regulation of vegetative and reproductive development (Os08t0137100-01)
Sequence

MAKLGPGQGLGCEAAVGLLAPSRKREYKACNKLTEGKRPLYAIGFNFLDFHYYEVFATVG
GNRVTTYSCLKDGNFAILQAYIDEDKDESFYTLSWACDLDGTPLLVAAGSNGIIRVINCA
TEKLLKTFVGHGDSINEIRTQALKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNE
VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWPYVEQSFTWTDLPSKFPTKYVQFPVLVA
VVHSNYVDCTRWLGDFILSKSVDNEIVLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIK
FSCDFHFNQLAIGNREGKVFVWEVQSSPPVLTARLTNPQCKSAIRQTAVSFDGSTILACS
EDGSIWRWDEVDHPKA

Transcript Sequence

Transcript ID

Os08t0137100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:2077234:2083272:1 gene:Os08g0137100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FERTILIZATION-INDEPENDENT ENDOSPERM 2 description:WD40 Polycomb protein of the PRC2 complex, Regulation of vegetative and reproductive development (Os08t0137100-01)
Sequence

GGGAGATGAAAAAACTCCAGCCTCATGGGCCTGTGCATATGACCCATAGGCAGGCGACAC
CGCGGCAGCAGAGCGCTGCACGACCTCCGCCTCCCCCAATCCGTCCCGTCTCCTCGCCCG
CCGCCCTCGACTCCCGTCTCCTCGCCTGCCGCTGGCGCCGATCTCCATCCTGCTAGCAGA
GGTGGCGCCGGCGTCCTCCTGCTCCCGCCGCATTCGCTCACCGGTGAGCATCCTAATCCA
TCCCATCCGGTCTCGGTCTCGGCCTCGGCCTCGAATTTCGTCTCCTCGCCCGCCGCTTGC
GCCGATCCCCATCCTGCGAGCAGAGGTGGCGCCCGGCGTCCTCCTTCTTCCACCGCATCG
TCGCTCGCCGCCGTTATGAACTTCCAAATTTGGTTCCAAACTCTGAACTTTTGCTCGCCC
TACTAACCCCCCTCACAAATCGCCCAAAATCCGAACGACGCCGCCGCCGGAATCCGCCAC
CGCCGCCGACGGAAGCAAGGGCAGGTCAGGCCGTCGTCGGGAGGGGGGGAGAGGAGAGGC
GCATGGCGAAGCTGGGGCCGGGGCAGGGGCTGGGGTGCGAGGCGGCGGTGGGGTTGCTGG
CGCCAAGCAGGAAGAGGGAGTACAAGGCGTGCAACAAGCTCACCGAGGGGAAGCGGCCGC
TCTACGCCATCGGATTCAACTTCCTCGACTTCCACTACTACGAGGTCTTCGCCACCGTCG
GCGGCAACCGCGTGACAACCTACAGCTGCCTCAAGGATGGTAATTTTGCTATCCTGCAAG
CATATATTGATGAGGATAAGGATGAATCGTTCTACACACTGAGTTGGGCTTGTGATCTTG
ATGGCACACCGCTGTTAGTGGCTGCAGGAAGCAATGGGATCATTCGGGTCATCAACTGTG
CCACTGAGAAGTTACTCAAGACTTTTGTTGGCCATGGCGATTCAATAAACGAGATAAGAA
CTCAAGCATTAAAGCCTTCGCTCATCATTTCTGCAAGCAAGGATGAATCTGTTAGGCTGT
GGAATGTTCACACAGGGATCTGCATTTTGATTTTTGCTGGAGCAGGAGGTCACCGGAATG
AAGTATTGAGTGTTGACTTCCACCCATCTGATATCTACCGCATAGCAAGTTGTGGCATGG
ATAACACTGTTAAAATATGGTCAATGAAGGAATTCTGGCCATATGTTGAGCAATCCTTTA
CATGGACTGACCTTCCATCAAAATTTCCAACAAAATATGTGCAATTTCCGGTCTTGGTTG
CTGTAGTACATTCTAACTATGTTGATTGTACTAGATGGCTTGGTGACTTCATTCTGTCAA
AGAGTGTTGACAATGAAATTGTGCTGTGGGAGCCAAAAACAAAAGAACAAAGTCCCGGGG
AGGGTAGCATTGATATTCTTCAGAAGTATCCTGTGCCAGAATGTGATATCTGGTTTATCA
AATTCTCATGCGATTTTCACTTCAATCAATTGGCAATAGGCAACCGTGAAGGAAAAGTCT
TTGTCTGGGAAGTACAGTCCAGTCCTCCTGTTTTAACTGCTCGGCTGACTAATCCGCAAT
GCAAATCTGCGATAAGGCAGACTGCCGTGTCATTTGATGGAAGCACAATCCTTGCCTGCA
GCGAGGATGGCAGCATATGGCGATGGGATGAAGTGGACCATCCAAAAGCATGAAAAGTAC
CCTTATAGACAGACCATGGCAATGCCAGATTAAGATTGACTTGGGAATTCCTGCATGTGT
ACTTTGTTGTGGGGGTTATAGTAATCAGTCTTACTGTTGAAAAAAAGTGCAATCTGATAC
TCTGAAATTAGAAGGATTGACAGCTGAATGCTGGGGTTACCAACTTGAATGTTGCAAATA
GGATACTGCTTCTGTTATATGCTGAATGTTTCAAGTTAGGGCCTTTTTGTAAATGGGAAG
ATTCGGCTATGCCAGATTTTTGGAAAAGTTGCCATTTGCTTTGTTACCAAAGTTGCATGG
CAAAGATTGGCCC