Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0135900-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:2030946:2033050:1 gene:Os08g0135900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:tryptophan synthase description:Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20) (Orange pericarp 1) (Fragment). (Os08t0135900-01);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-02);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-03)
Sequence	AAGAGGGAGGATCTTAACCACACTGGCGCCCACAAGATCAACAATGCTGTCGCTCAAGTC TTGCTTGCCAAGCGGCTTGGGAAGGAACGTATCATCGCCGAGACTGGCGCCGGCCAGCAC GGTGTTGCCACTGCCACGGTGTGCGCGAGGTTTGGGCTGCAGTGCATCATCTACATGGGT GCTCAGGATATGGAGAGGCAGGCACTTAATGTTTTCAGGATGAAGCTTCTTGGAGCAGAG GTGAGGGCAGTACATTCTGGGACAGCAACTTTGAAGGATGCCACCTCGGAGGCCATCCGT GACTGGGTCACCAATGTTGAGAACACTCACTACATTTTGGGATCAGTTGCTGGTCCGCAT CCATACCCGATGATGGTGAGAGAGTTCCATAAGGTGATTGGCAAGGAGACCCGTAGACAG GCCATGGAGAAGTGGGGTGGCAAGCCTGATGTCTTGGTTGCTTGTGTTGGTGGTGGATCA AACGCCATGGGTCTCTTCCATGAGTTCGTTGATGATCAAGATATAAGAATGATTGGAGTG GAGGCTGCTGGCTATGGTGTAGACACTGACAAACATGCTGCCACTTTGACAAAGGGAGAA GTGGGAGTTCTCCATGGATCATTGAGCTATGTGTTGCAGGATGATGATGGACAAGTTATT GAACCCCACTCCATTAGTGCTGGGCTGGACTACCCTGGTGTTGGGCCTGAGCATAGCTTT TTGAAGGATATTGGACGTGCTGAATATGACAGCGTGACAGATCAGGAGGCACTGGATGCT TTCAAGCGCGTCTCTCGGCTGGAGGGCATCATCCCTGCTCTGGAGACGTCCCATGCGCTC GCCTACCTGGAGAAGCTCTGCCCAACGCTGCCCGACGGCGTGAGGGTGGTGGTGAACTGC AGTGGAAGAGGAGACAAGGATGTCCACACAGCCAGCAAGTACCTTGATGTCTGA

Peptide Sequence

PEP ID	Os08t0135900-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:2030946:2033050:1 gene:Os08g0135900 transcript:Os08t0135900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:tryptophan synthase description:Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20) (Orange pericarp 1) (Fragment). (Os08t0135900-01);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-02);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-03)
Sequence	KREDLNHTGAHKINNAVAQVLLAKRLGKERIIAETGAGQHGVATATVCARFGLQCIIYMG AQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVENTHYILGSVAGPH PYPMMVREFHKVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDQDIRMIGV EAAGYGVDTDKHAATLTKGEVGVLHGSLSYVLQDDDGQVIEPHSISAGLDYPGVGPEHSF LKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGVRVVVNC SGRGDKDVHTASKYLDV

Transcript Sequence

Transcript ID	Os08t0135900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:2030946:2033050:1 gene:Os08g0135900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:tryptophan synthase description:Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20) (Orange pericarp 1) (Fragment). (Os08t0135900-01);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-02);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-03)
Sequence	AAGAGGGAGGATCTTAACCACACTGGCGCCCACAAGATCAACAATGCTGTCGCTCAAGTC TTGCTTGCCAAGCGGCTTGGGAAGGAACGTATCATCGCCGAGACTGGCGCCGGCCAGCAC GGTGTTGCCACTGCCACGGTGTGCGCGAGGTTTGGGCTGCAGTGCATCATCTACATGGGT GCTCAGGATATGGAGAGGCAGGCACTTAATGTTTTCAGGATGAAGCTTCTTGGAGCAGAG GTGAGGGCAGTACATTCTGGGACAGCAACTTTGAAGGATGCCACCTCGGAGGCCATCCGT GACTGGGTCACCAATGTTGAGAACACTCACTACATTTTGGGATCAGTTGCTGGTCCGCAT CCATACCCGATGATGGTGAGAGAGTTCCATAAGGTGATTGGCAAGGAGACCCGTAGACAG GCCATGGAGAAGTGGGGTGGCAAGCCTGATGTCTTGGTTGCTTGTGTTGGTGGTGGATCA AACGCCATGGGTCTCTTCCATGAGTTCGTTGATGATCAAGATATAAGAATGATTGGAGTG GAGGCTGCTGGCTATGGTGTAGACACTGACAAACATGCTGCCACTTTGACAAAGGGAGAA GTGGGAGTTCTCCATGGATCATTGAGCTATGTGTTGCAGGATGATGATGGACAAGTTATT GAACCCCACTCCATTAGTGCTGGGCTGGACTACCCTGGTGTTGGGCCTGAGCATAGCTTT TTGAAGGATATTGGACGTGCTGAATATGACAGCGTGACAGATCAGGAGGCACTGGATGCT TTCAAGCGCGTCTCTCGGCTGGAGGGCATCATCCCTGCTCTGGAGACGTCCCATGCGCTC GCCTACCTGGAGAAGCTCTGCCCAACGCTGCCCGACGGCGTGAGGGTGGTGGTGAACTGC AGTGGAAGAGGAGACAAGGATGTCCACACAGCCAGCAAGTACCTTGATGTCTGAAAAAAC TCTAGAGGGGCTAAAAAATGATAGCTTTTCCATGAGCAGTTTTGAAAGGGTGCAATACAA CAGCAGCAATTGATTAGAGCTTTGTTATTTGGATAAAAAAGTACCAATAATGCTTGGAAG TTCATATTAGCTACAAGAGTATCTTTGTTTGTTTGTCTTTGTATCTGAATGATGTTATTG GCGGAGTTGGTAAATATAACTAAATAAACACCAATCTTTCTCC