Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0120200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:1111315:1115778:1 gene:Os08g0120200 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, AAA+ type, core domain containing protein. (Os08t0120200-01)
Sequence	TGTGGTGGTGGTGGTGGTGAACGGAGGAGGGAGGGAGCGGCGCGCGGCCGTGGCGGTGGA GGTGGAGGTGCGGAAAAGCCGCGGCGTTGTTGTCTTGCGTCGTCGTCGTTGTGGTTGTCG TTCGTGTTTGGGGGGGAGCATAGTTCATTGGGGCCTTGCAAGATGATTGAGGGGAGGAGG CACTCCGTTGACATCCCGATTTCGAGGGCTCTACTGGCCGTCATGAGGTCCAGATCTCTG AGGGACCCTGAGACCAACTCGCTGGCCAAGTTCTCGGCGAAGAAGACCATCTGGGAGGGT TGTTCTCTCGAGGAAGATGACCTGGAGGGGAGCAATTATGGTAGGCACAGCTTTAGTTAC AACATGTATGATCATCTCCAGAGGAGGAGGGAGGAGTTTGGGGACAGCGCGAGGTCTGGT CGGCTGGTGAACTCGCCGATCAACATCATCAAGGCCAATGCGAGGGTCAAGGCGGCGCTT CATAACCAGACCTGCTCCTCGGTGATCTCGGGGATGTCAAGGGCAACAAAGGACAGGGCA TCCTCTTTGATGATTGAAGGAGAGCAATTGGGTCGGAGGGAGGGAGCTACATTTCAAGAA AGCGCGAGAAGTTTGCTTCAAAAGTACCGGCCCAAGGCTTTCTCTGAGCTGGCTGGACAA AATGTTGTTGCTCAGTCTCTTTCAAGTGCTGTTTTGAAAGGAAAACTTGCTCCAATCTAT CTCTTCCATGGTCCACATGGCATAGGAAAGACATCTGCAGCTAGAATATTTGCCGCATCA CTGAATTGCCACTCTTCAGGTGGGAACCAGCCTTGTGGGCACTGTGAGGAATGCATGGCC ATATTCTCAGGAAACAGTAGCAGTGTGATAGAGATTGATGCTTCTAAACTGGATTGCAAA TCTAGAGTTGCTGCCTTGCTGAGGAATGCCTGTGAAGTTCCTGCTTCTTCGCACTTCAAG GTTCTTATTGTGGATGATTGCCAACACATGGATAAGGAGGGATGGTACTCTGTCTACAGT AGCCTTGAAGGCATCCCTGACAGCTCAATCTTTGTGATGATCACATCTGACATTGATAAA CTGCCAAGTAATTCAGTTGGATGGTGCCAGAGCTACAGGTTTTGCAAGGTAGACGAAGCA GAGATCGCCCTCCGATTGAGTAGGATTTGCATAAATGAAGGTATGGAGTTCGAGGCCGAA GCACTGGAGCTTATTGCTCGCAAGGCCAACGGTTCCATTCGAGATGCAGTTCAAATGCTT GACCAGCTTACTCTGCTAGGAAAAAGGATCAGCAAATCAGTAACATATGACCTAATAGGC GATGTCTCAGATGAGGAGTTGCTTGATCTTCTTAATCTGGCTTTTTCATCGGATGCTGCT ACCATTGTCAGGAGGGCTAGGGAGCTTTTGAGCTCAAAGGTTGACCCCCTGCAGTTATTA GCTCAGCTTGCAAATCTTATCATGGATATTTTAGCTGGGAGGCACCAGTCAGATTCCCAA GAAGTTAGAAAGGTTACTGGTAAACATACATCGGCTGAAATTGATGTGCACAAACTTAGA AATGCACTGGAAATACTTTCTGAAACTGAAAAGCAGCTGAAAACCACAAAGAACCAGTCT ACATGGCTTACAGCAGCGCTGTTACAGTTTAATATGAGAGAGCCGTACTGCCTAGATGAT GCTGCAGTTTCAAGCATGTTCACAGAGAGTCAGACAGATGATGGGGCTGCTATCTTGAAA GACGAAAGCTTAGATACCAGTTCTCATCTTTGCTATCAGAACAAAATCGGTTGTTTAGAT ATGAACTTAGGAGATCCAGATGTGCTCGAGACCATATGGATTAAGGCTCTTGAGAACTGC ACGTCTAAACCACTTCATAGTCTGTTGAGAAAAGATGGGAAGTTGTCATCCCTGTACACC ACTCAAGGTGTAGCAGTTGCTGAGCTGCAGTTCTGCCACCCCGAGGATGTACCTACAACA GAGAGCTTTTGGAATCCATTTGTGGTTTCTCTGCAGAATTTGCTAAAGTGCAATGTGGAT ATCAGGATCAATCTTTCCCCAATCTCCACCAGCAACAGAGTTGTATCCAAGAATTCATCA GTAAGCCTGGTCATGCAATCCAGAGAAGATCAGGAGACAGAAGATCCAGTTGCCGCAGGT TGCAGAACAGTAGCTTCATCAAGAAAAGAGTGCCCTTCTCCACTCGCGGTGCAACCAAAG GAGAAGCCGTCGCACATTCTGGGGTGCCTCCATGCTACAGATGGCGACGCGGTGGATACC GAGTCGAGGATCTTGAGCTATCAGAAGATTTCAGTCATACCTGAAGCATCCACTCCAGGA AATGGTTCCTTCAAAGCTGGAGGGCACACACCAAAGGTTGACGAAGCCAGAGCTCGCCGA GGCTGTTTCTCGAAGCTTCTACAGCGCCGTGCTGGTGCTCCTTATCAAAATGGAGCTTTG CCTCGCAGGGGACTGTTCAAATGCTGTTTCTGCAAGATCAGACCAGACTGCAAGACGAAA GTGGAAGAAACTGATGGGTTCCAAGGGCACAGTAAAAACTGA

Peptide Sequence

PEP ID	Os08t0120200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:1111315:1115778:1 gene:Os08g0120200 transcript:Os08t0120200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, AAA+ type, core domain containing protein. (Os08t0120200-01)
Sequence	CGGGGGERRREGAARGRGGGGGGAEKPRRCCLASSSLWLSFVFGGEHSSLGPCKMIEGRR HSVDIPISRALLAVMRSRSLRDPETNSLAKFSAKKTIWEGCSLEEDDLEGSNYGRHSFSY NMYDHLQRRREEFGDSARSGRLVNSPINIIKANARVKAALHNQTCSSVISGMSRATKDRA SSLMIEGEQLGRREGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIY LFHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCK SRVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDK LPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQML DQLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLL AQLANLIMDILAGRHQSDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQS TWLTAALLQFNMREPYCLDDAAVSSMFTESQTDDGAAILKDESLDTSSHLCYQNKIGCLD MNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHPEDVPTT ESFWNPFVVSLQNLLKCNVDIRINLSPISTSNRVVSKNSSVSLVMQSREDQETEDPVAAG CRTVASSRKECPSPLAVQPKEKPSHILGCLHATDGDAVDTESRILSYQKISVIPEASTPG NGSFKAGGHTPKVDEARARRGCFSKLLQRRAGAPYQNGALPRRGLFKCCFCKIRPDCKTK VEETDGFQGHSKN

Transcript Sequence

Transcript ID	Os08t0120200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:1111315:1115778:1 gene:Os08g0120200 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, AAA+ type, core domain containing protein. (Os08t0120200-01)
Sequence	GAGTCTCCATGCCGTGCTCGCGCTATTAATGTGGTGGTGGTGGTGGTGAACGGAGGAGGG AGGGAGCGGCGCGCGGCCGTGGCGGTGGAGGTGGAGGTGCGGAAAAGCCGCGGCGTTGTT GTCTTGCGTCGTCGTCGTTGTGGTTGTCGTTCGTGTTTGGGGGGGAGCATAGTTCATTGG GGCCTTGCAAGATGATTGAGGGGAGGAGGCACTCCGTTGACATCCCGATTTCGAGGGCTC TACTGGCCGTCATGAGGTCCAGATCTCTGAGGGACCCTGAGACCAACTCGCTGGCCAAGT TCTCGGCGAAGAAGACCATCTGGGAGGGTTGTTCTCTCGAGGAAGATGACCTGGAGGGGA GCAATTATGGTAGGCACAGCTTTAGTTACAACATGTATGATCATCTCCAGAGGAGGAGGG AGGAGTTTGGGGACAGCGCGAGGTCTGGTCGGCTGGTGAACTCGCCGATCAACATCATCA AGGCCAATGCGAGGGTCAAGGCGGCGCTTCATAACCAGACCTGCTCCTCGGTGATCTCGG GGATGTCAAGGGCAACAAAGGACAGGGCATCCTCTTTGATGATTGAAGGAGAGCAATTGG GTCGGAGGGAGGGAGCTACATTTCAAGAAAGCGCGAGAAGTTTGCTTCAAAAGTACCGGC CCAAGGCTTTCTCTGAGCTGGCTGGACAAAATGTTGTTGCTCAGTCTCTTTCAAGTGCTG TTTTGAAAGGAAAACTTGCTCCAATCTATCTCTTCCATGGTCCACATGGCATAGGAAAGA CATCTGCAGCTAGAATATTTGCCGCATCACTGAATTGCCACTCTTCAGGTGGGAACCAGC CTTGTGGGCACTGTGAGGAATGCATGGCCATATTCTCAGGAAACAGTAGCAGTGTGATAG AGATTGATGCTTCTAAACTGGATTGCAAATCTAGAGTTGCTGCCTTGCTGAGGAATGCCT GTGAAGTTCCTGCTTCTTCGCACTTCAAGGTTCTTATTGTGGATGATTGCCAACACATGG ATAAGGAGGGATGGTACTCTGTCTACAGTAGCCTTGAAGGCATCCCTGACAGCTCAATCT TTGTGATGATCACATCTGACATTGATAAACTGCCAAGTAATTCAGTTGGATGGTGCCAGA GCTACAGGTTTTGCAAGGTAGACGAAGCAGAGATCGCCCTCCGATTGAGTAGGATTTGCA TAAATGAAGGTATGGAGTTCGAGGCCGAAGCACTGGAGCTTATTGCTCGCAAGGCCAACG GTTCCATTCGAGATGCAGTTCAAATGCTTGACCAGCTTACTCTGCTAGGAAAAAGGATCA GCAAATCAGTAACATATGACCTAATAGGCGATGTCTCAGATGAGGAGTTGCTTGATCTTC TTAATCTGGCTTTTTCATCGGATGCTGCTACCATTGTCAGGAGGGCTAGGGAGCTTTTGA GCTCAAAGGTTGACCCCCTGCAGTTATTAGCTCAGCTTGCAAATCTTATCATGGATATTT TAGCTGGGAGGCACCAGTCAGATTCCCAAGAAGTTAGAAAGGTTACTGGTAAACATACAT CGGCTGAAATTGATGTGCACAAACTTAGAAATGCACTGGAAATACTTTCTGAAACTGAAA AGCAGCTGAAAACCACAAAGAACCAGTCTACATGGCTTACAGCAGCGCTGTTACAGTTTA ATATGAGAGAGCCGTACTGCCTAGATGATGCTGCAGTTTCAAGCATGTTCACAGAGAGTC AGACAGATGATGGGGCTGCTATCTTGAAAGACGAAAGCTTAGATACCAGTTCTCATCTTT GCTATCAGAACAAAATCGGTTGTTTAGATATGAACTTAGGAGATCCAGATGTGCTCGAGA CCATATGGATTAAGGCTCTTGAGAACTGCACGTCTAAACCACTTCATAGTCTGTTGAGAA AAGATGGGAAGTTGTCATCCCTGTACACCACTCAAGGTGTAGCAGTTGCTGAGCTGCAGT TCTGCCACCCCGAGGATGTACCTACAACAGAGAGCTTTTGGAATCCATTTGTGGTTTCTC TGCAGAATTTGCTAAAGTGCAATGTGGATATCAGGATCAATCTTTCCCCAATCTCCACCA GCAACAGAGTTGTATCCAAGAATTCATCAGTAAGCCTGGTCATGCAATCCAGAGAAGATC AGGAGACAGAAGATCCAGTTGCCGCAGGTTGCAGAACAGTAGCTTCATCAAGAAAAGAGT GCCCTTCTCCACTCGCGGTGCAACCAAAGGAGAAGCCGTCGCACATTCTGGGGTGCCTCC ATGCTACAGATGGCGACGCGGTGGATACCGAGTCGAGGATCTTGAGCTATCAGAAGATTT CAGTCATACCTGAAGCATCCACTCCAGGAAATGGTTCCTTCAAAGCTGGAGGGCACACAC CAAAGGTTGACGAAGCCAGAGCTCGCCGAGGCTGTTTCTCGAAGCTTCTACAGCGCCGTG CTGGTGCTCCTTATCAAAATGGAGCTTTGCCTCGCAGGGGACTGTTCAAATGCTGTTTCT GCAAGATCAGACCAGACTGCAAGACGAAAGTGGAAGAAACTGATGGGTTCCAAGGGCACA GTAAAAACTGAAACAAGGGTTGATGATCAAGATGATGAATTTCATTTGGTTGAAGCTGAC TACAAGTTGTCCATTCTTGTATACTGTTATTTTAGATGGGCTCTGGGTTAAGATCACCTC AGTTTAGATGAAAGTATGTGAATCTGTTAACTGCATCTCTCTTGTGAGTTCTGACACAAT AGATGCGCATCACTGACTGAAATGTTTTGAACATCTCTGGTAGTAGCTCAATGATTGACC ATCAGTTGGATCACATAT