Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0117100-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:953687:956144:1 gene:Os08g0117100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0117100-01)
Sequence

ATGGCTGCCTCCTCCCACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCC
CGTCACCTCTCCTCCTCCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCAC
CTCCACCGCCACCGCCTCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGA
GCCAGCGCGGGGCCACTGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCG
GAGGCAGCGGAGTCGAACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCG
GGCGGCAATGCCGCGGGGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCC
GGTTCCGGGGAGGGGCGGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAAT
CTTCCCCGCCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTC
CTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTC
ACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTG
GATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATC
AACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTAC
GTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGC
GGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTAT
GGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACG
CATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGA

Peptide Sequence

PEP ID

Os08t0117100-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:953687:956144:1 gene:Os08g0117100 transcript:Os08t0117100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0117100-01)
Sequence

MAASSHYALLHHHLPNPLHPRHLSSSSSPSPPPPLHLHLHLHRHRLALSTARFFRLAERR
ASAGPLVFETEEERSGWSGAEAAESNYDDEEDEEEEQGWAGGNAAGWRGESHEDDQEEGS
GSGEGRRPRRSRPRELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFV
TMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIY
VGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALKLDNT
HFHGRNILVRQAHEERQAH

Transcript Sequence

Transcript ID

Os08t0117100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:953687:956144:1 gene:Os08g0117100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0117100-01)
Sequence

GTATCATCCTCTTCCTCCCGCCCCCGACCTCTCTTCCCTATCCACCCCATCCATGGCTGC
CTCCTCCCACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCCCGTCACCT
CTCCTCCTCCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCACCTCCACCG
CCACCGCCTCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGAGCCAGCGC
GGGGCCACTGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCGGAGGCAGC
GGAGTCGAACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCGGGCGGCAA
TGCCGCGGGGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCCGGTTCCGG
GGAGGGGCGGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAATCTTCCCCG
CCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGT
TGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCG
TTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCG
TGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGAC
TCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAA
CATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGT
CGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCT
CTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCA
TGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCA
GGGATTATTGGAGACCTATTGCAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTT
GGGCGCAATGCTGCACATCAAGACTAACATGTGTTTTTTTTTTTGGTATGTATTGAGTAT
TCTGTATTCTAGTGACTTGAGTACAATGCGAATGGGTACTAGCAATCTTTCCACT