Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0110600-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:557525:558586:-1 gene:Os08g0110600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1442 domain containing protein. (Os08t0110600-00)
Sequence

ATGTCCAAGCTAGTCTCAGCTGGTTGGTCTCCTGATCTCGCCATGGATGCCTACCTGCAC
ACCCTGCAACTGTGCAAGGAGCAGCAGCAAGATGATGCTCGTGGCAGTGGCATGGTGATG
GAGCCGAGGAGCATGGAGTACATCGCCGCGCTGGCCGCCGGCAACCAGGCGCGCCACCTC
CTCGACGTCGCCTCCTCCGCCGGCGGGGGCGGCGCTTCGTCGTCGTCGTCGTCATCCCCG
GCCACGGCTGTCGCGCTCGCCATCGCCGCCGCGCGGACGGGAGGCCGCCTGGTCTGCGTC
CGCGACGACCAGCAAGGCCTCGACGGCGTCAGGCGCCACCTCCGCCGCCTCGGCCTGGCG
ACCTCCGCGGTGGACTTCCAGCTCGCGCCGTCGCCGTCGGCGGCCGTCCGGCGGCTGCGC
CGCGTCGACTTCGCCGTCGTGGACGCCGGCGTGGAGCGCTGCGGCGAGGTGCTCGGGGCC
GTGGACGTGGACCCCATGGGTGCCATCGTCGTGGTCACCAACGTCTTCCAAGAAGAGAGG
ACGAGCTGGAGCTCGAGGTCTGGCCATGGCGATGGCAGTAGGGTTTGCAGCTATGGGCAG
GTGGTAGGGAAGGGCAGGTCGATGGTGTTGCCGATCGGCCATGGCGGCATGGAGGTGACG
AAGCTAGGGCTAGGCCGTAGGGTAGGAGGAGGGGGGTTGATTGGGGCCCACTTGCAGTGG
CAGAGGCAGCAGAAGAAGAAGCTTGTGAGCACACCCAAGAGGACTTTCTTGGTTTGTGAT
GGATCATCTTGA

Peptide Sequence

PEP ID

Os08t0110600-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:557525:558586:-1 gene:Os08g0110600 transcript:Os08t0110600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1442 domain containing protein. (Os08t0110600-00)
Sequence

MSKLVSAGWSPDLAMDAYLHTLQLCKEQQQDDARGSGMVMEPRSMEYIAALAAGNQARHL
LDVASSAGGGGASSSSSSSPATAVALAIAAARTGGRLVCVRDDQQGLDGVRRHLRRLGLA
TSAVDFQLAPSPSAAVRRLRRVDFAVVDAGVERCGEVLGAVDVDPMGAIVVVTNVFQEER
TSWSSRSGHGDGSRVCSYGQVVGKGRSMVLPIGHGGMEVTKLGLGRRVGGGGLIGAHLQW
QRQQKKKLVSTPKRTFLVCDGSS

Transcript Sequence

Transcript ID

Os08t0110600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:557525:558586:-1 gene:Os08g0110600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1442 domain containing protein. (Os08t0110600-00)
Sequence

ATGTCCAAGCTAGTCTCAGCTGGTTGGTCTCCTGATCTCGCCATGGATGCCTACCTGCAC
ACCCTGCAACTGTGCAAGGAGCAGCAGCAAGATGATGCTCGTGGCAGTGGCATGGTGATG
GAGCCGAGGAGCATGGAGTACATCGCCGCGCTGGCCGCCGGCAACCAGGCGCGCCACCTC
CTCGACGTCGCCTCCTCCGCCGGCGGGGGCGGCGCTTCGTCGTCGTCGTCGTCATCCCCG
GCCACGGCTGTCGCGCTCGCCATCGCCGCCGCGCGGACGGGAGGCCGCCTGGTCTGCGTC
CGCGACGACCAGCAAGGCCTCGACGGCGTCAGGCGCCACCTCCGCCGCCTCGGCCTGGCG
ACCTCCGCGGTGGACTTCCAGCTCGCGCCGTCGCCGTCGGCGGCCGTCCGGCGGCTGCGC
CGCGTCGACTTCGCCGTCGTGGACGCCGGCGTGGAGCGCTGCGGCGAGGTGCTCGGGGCC
GTGGACGTGGACCCCATGGGTGCCATCGTCGTGGTCACCAACGTCTTCCAAGAAGAGAGG
ACGAGCTGGAGCTCGAGGTCTGGCCATGGCGATGGCAGTAGGGTTTGCAGCTATGGGCAG
GTGGTAGGGAAGGGCAGGTCGATGGTGTTGCCGATCGGCCATGGCGGCATGGAGGTGACG
AAGCTAGGGCTAGGCCGTAGGGTAGGAGGAGGGGGGTTGATTGGGGCCCACTTGCAGTGG
CAGAGGCAGCAGAAGAAGAAGCTTGTGAGCACACCCAAGAGGACTTTCTTGGTTTGTGAT
GGATCATCTTGA