Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0109400-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:468151:473510:1 gene:Os08g0109400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA25 description:AUX/IAA protein family protein. (Os08t0109400-01)
Sequence

ATGAAGAGCTCTTCAGTTGCACCAAGGCTGAAACAGGAGAGACAAGATGACTGTAAGTTT
CAGGAAGGTGATGTGAACAGCCTTGAGCTTCGGCTTGGCATATCTTCCGACAATGACCAG
ATCAGTGGTGGTGGTGCTGCTAGTCCATGGCTTGGTGTGGGAGTGCACCCTTGGAGCCTG
GCTGCAAGGCAAGGGAAGGCAGCCTTGGAGCAAGCTCACCAGAGGCCTAATGAATGTGCT
GTCCAAAGAGAAAACCGCGCGGCTTCATCAGCTCAGCTGGTGGGATGGCCACCGGTGCGC
GCATTCCGCAAGAACCTGTCCACCCCAAAACCTGCAGATGCAGATGACCTGATGAACAAG
GTGAAGCTCTGCTCTGATGAGGGCCATGGCTCCAGATGTGCAGCCCAAGAGAGGAGGTCA
TCATCAACCATGTTTGTGAAGGTGAACCTGGAGGGCTATGCTGTCGGAAGGAAGATCGAC
CTGAAGGCGCACCGCAGCTATGACTCTCTGTCCCAGGCTCTGCAGAGCATGTTCCATGGC
TTCTTGTCAGATGGCATTGCAACTAGAGACAATGAGCTGCAGCAGATGGAGGAGGGCAGC
AAGAAGAGGTATGTTCTTGTGTATGAGGATAATGAGGGAGACCGCATGCTCGTCGGCGAC
GTCCCATGGGAGCTGTTCATTGCTTCAGTGAAGAGGCTCTACATTGCTCAGGATCCTAGA
GTTCATGCGAAGCTACGATAA

Peptide Sequence

PEP ID

Os08t0109400-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:468151:473510:1 gene:Os08g0109400 transcript:Os08t0109400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA25 description:AUX/IAA protein family protein. (Os08t0109400-01)
Sequence

MKSSSVAPRLKQERQDDCKFQEGDVNSLELRLGISSDNDQISGGGAASPWLGVGVHPWSL
AARQGKAALEQAHQRPNECAVQRENRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNK
VKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHG
FLSDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYIAQDPR
VHAKLR

Transcript Sequence

Transcript ID

Os08t0109400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:468151:473510:1 gene:Os08g0109400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA25 description:AUX/IAA protein family protein. (Os08t0109400-01)
Sequence

GGGTCTCTGGGTTCTCTGCTCCCTAACAGAAAAGAAAGAAAGAAAGAAGCTTTCACCACA
AAAACCCAACCCACCGGTGGACAAGAGGAATTCGACTATTCCAGATAGGGCGACATGGAC
TGCGAGATGAGGCGACTCTAGTGCCAGTCACTCCGGTGGCCCATTTTTTCTTCCTTTTTC
AGGGGAAAAAAAGGAAGGAATTTGGGTAGATCAATCAATGGAGCAGAGAAATTCGATGTT
TGTTTGTTTGTTTGTTCAATAGAGGAGAGCAATTCTTGGTCATGTATGCATCTTGCCCAC
AGTGGAAGGAGTGAGTGTGATTTGGAAGACGCAGGTAGAGGGTGTGCCTTCCAGGTGTTC
GATCATTTGCCTCAAAGAATCCATATCCTCTTTTGTGCTACTGTCCAGATGATGTTCAGG
AATAATAACAGAAAGAAAACTCCAAGAGTGCTGACAAGTGACAACCAGGAGATGCAGACA
TGCAGTTCCTCGATGAATGATTCCTGATGTCCTTGTACAGTTGTCCTCAGCCATTTGGAA
CAATGGGGATTCTTTGCCGGTATGCTCTATCATCAGGAAGGAACATTTCTGTGAGAAGAG
CTGCTACAAGATATGTATGAGTTAGTTAAAAGAAAAAAAAAGATACTAGAAACCAAAGCT
ACAGAAGAAGCAATTAGAGGGGCCTAACTCATCATTGTGAGCCTGAACATAATGCAGTGT
TAAAGATAAGTCAACAAAGCTTCTTGTCTGAGTCCACTTATGTTCTGAAAATGGCATGGC
ATGCAGATCAGACAGGACATATTGCTGCAGCACCTATTAATCTGCCTACTCCTTAAGCAC
TAAGAAAGAAATATATACTAAAGTGTTTATTCCAGTTATTTTTAGGTGGGACAAGATACT
CCTGAGTAAACAACCCATCATTACTTTGTGATACAATTAGGCAGGCCAATCATGGAGCTA
AATGGAATAGAACTTGCTTAGGGATAGCTTATAGGTTTTCTCTTTGCACCTTAATAGATC
TTCACATCCTTGTTAAGAGACGTGCCTTTAAATGATTAAATTAAGGAAGTACATGCAAGT
GGTAAAGCTTTTCGGGAATACGCAAGGAGCGCATTTTTTCCATTAAGAGAAATAAAAGTT
ATTTACATTTGAAAGAGAAAAACAGCACGGGACTGATACAGGACAATAACAGACAATCCT
AGGTCTATCTCTCGCGCAAGTGGTAAAGCTGATAGGTGAAAAGATGAGTGTCTTTCTAAT
AAAGCTTCTCACCTTACATGTAAAGAACAGATACTAAATATTATGTTAACATGGAACGTA
AGGAGCTGTCATTGTACAAAGAGGATCAACAGCAAAGTAATATTTCTTTTCTAGTATATA
ATAAAGTTTGTACAATCCAATAGATTCTTAGGAGCTATTTTTTCTTCAAGTGAGGATTTT
GATGCATATATGTAGGCATCATGGAATCATATGCCTTGCTTCCACATTAACTTAAGAGCA
GTCTGAATAAGCATAGGTCATCCAACTTGTCAGGTTTAATCGATTTTGGTTAGAAAAGCA
AAGATTATCTGTACTAATGCAGAGGGACCAAATGGCCATCTTGAGTTACTTTACCAAGGT
CTCATGTGGGCAGAAAAGGCAAAGCTTATGGTAAAATGGGCAATGATGAGAAATGTGCTC
TCCAGTGTGTCACCACAAGCACTAAGACACTATCTAATGGTTGGAAAACGTCACAGGAAC
CATAGAAGAAGATCCCAGGTTCATCATAATAGAAGCTGAACAAAGAAAGCAGAGCAGGGG
AGCATGCTTACTTTCAGGAAAAGATTGAAGTGGACTGAAGTTTCAACTGGAGCTCCAATA
GACACCACATTCCCCACCAAGACACAAGTTTGGGAGAAGAGAATCCATGAAGAGCTCTTC
AGTTGCACCAAGGCTGAAACAGGAGAGACAAGATGACTGTAAGTTTCAGGAAGGTGATGT
GAACAGCCTTGAGCTTCGGCTTGGCATATCTTCCGACAATGACCAGATCAGTGGTGGTGG
TGCTGCTAGTCCATGGCTTGGTGTGGGAGTGCACCCTTGGAGCCTGGCTGCAAGGCAAGG
GAAGGCAGCCTTGGAGCAAGCTCACCAGAGGCCTAATGAATGTGCTGTCCAAAGAGAAAA
CCGCGCGGCTTCATCAGCTCAGCTGGTGGGATGGCCACCGGTGCGCGCATTCCGCAAGAA
CCTGTCCACCCCAAAACCTGCAGATGCAGATGACCTGATGAACAAGGTGAAGCTCTGCTC
TGATGAGGGCCATGGCTCCAGATGTGCAGCCCAAGAGAGGAGGTCATCATCAACCATGTT
TGTGAAGGTGAACCTGGAGGGCTATGCTGTCGGAAGGAAGATCGACCTGAAGGCGCACCG
CAGCTATGACTCTCTGTCCCAGGCTCTGCAGAGCATGTTCCATGGCTTCTTGTCAGATGG
CATTGCAACTAGAGACAATGAGCTGCAGCAGATGGAGGAGGGCAGCAAGAAGAGGTATGT
TCTTGTGTATGAGGATAATGAGGGAGACCGCATGCTCGTCGGCGACGTCCCATGGGAGCT
GTTCATTGCTTCAGTGAAGAGGCTCTACATTGCTCAGGATCCTAGAGTTCATGCGAAGCT
ACGATAATAGCAATGTTGCAAGCTGATCCTGAAAGCCTGGACCGCAACCGAGGATGAGAA
AGATCGATTGCTGCTTTTATCATGAGCAGATGCAAGGAAATATATATATGGCATAGGATG
ACAGGAGCATCATATTCAAAGAGACGAAGCAGCAATATGTGCTAGTGTTTAGCTGACATG
CTGTCCCTGTTCGCTTAATTAGTAGAATGATTAAATTTGCCTTGGTTGTGCTTGAGGGAG
CTAGTGCTCATACTAGACTATACTAATTCCCTAAAAAAAAACAACAAAAAAAGTAGACTT
CTAGTGCGGTTAATGTAGAAAGTTTTGGTTGTGTATATATTTTTTGACCTGTTGTACTAT
AATTGAACTGATGGTGCATTAGCTAGTGCTTGTTAATTAGCTTGTACTATGTGTGTGGGT
GGATGTAAATGACACTGGGTGCAATAAACTAGTCTTGGGT