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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0107900-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:384114:384836:1 gene:Os08g0107900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MAGO NASHI 1 description:Similar to Protein mago nashi. (Os08t0107900-01);Core subunit of exon junction complex (EJC), Multiple organ development and reproduction (Os08t0107900-02)
Sequence

ATGGCGACGGTGGCCGGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTAC
GTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTGGAGTTCGAGTTCCGGCCCGACGGG
AAGCTCCGGTACGCCAACAACTCCAACTACAAGAAGGACACCATGATCCGCAAGGAGGTG
TTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATGGGG
TTGGTGTACATACTACAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGACCGC
GTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCC
AAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTC
TACTACCTCGTCCAGGTCCCTCTACCCACCCTTTGCCTCTCACAAATCACTCAAGGATCC
ATTGCTAGCTAG

Peptide Sequence

PEP ID

Os08t0107900-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:384114:384836:1 gene:Os08g0107900 transcript:Os08t0107900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MAGO NASHI 1 description:Similar to Protein mago nashi. (Os08t0107900-01);Core subunit of exon junction complex (EJC), Multiple organ development and reproduction (Os08t0107900-02)
Sequence

MATVAGDDGGGGGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKKDTMIRKEV
FVSPSVLREATRIIHESEMGLVYILQIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTS
KIGSLVDVQTSKDPEGLRIFYYLVQVPLPTLCLSQITQGSIAS

Transcript Sequence

Transcript ID

Os08t0107900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:384114:384836:1 gene:Os08g0107900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MAGO NASHI 1 description:Similar to Protein mago nashi. (Os08t0107900-01);Core subunit of exon junction complex (EJC), Multiple organ development and reproduction (Os08t0107900-02)
Sequence

AAGAGGGAGGCTGCGGCGGCGGCGGAGGCGGAGGTGAGCATTGCAATGGCGACGGTGGCC
GGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGG
AAGTTCGGGCACGAGTTCCTGGAGTTCGAGTTCCGGCCCGACGGGAAGCTCCGGTACGCC
AACAACTCCAACTACAAGAAGGACACCATGATCCGCAAGGAGGTGTTCGTCTCCCCCTCC
GTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATGGGGTTGGTGTACATACTA
CAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGACCGCGTGGGAAGGCAGGAG
CTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTC
GTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAG
GTCCCTCTACCCACCCTTTGCCTCTCACAAATCACTCAAGGATCCATTGCTAGCTAGCTC
TCCATGTTTTACGCTACTTGAATTGGCGGCGCATACATAAAGCGCGTATGAGAGGTGAAA
TTGTTACCATATGCCTCATCAATTGCATCTCGTCTTCATCCATTCCATACC