Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0104700-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:254510:258757:1 gene:Os08g0104700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperonin Cpn60/TCP-1 family protein. (Os08t0104700-01);Hypothetical conserved gene. (Os08t0104700-02)
Sequence	GATGTGAAGAAATCCCTCAGTTCATCAACAAAAGTAGATGCTCCAAGTTCAATAACAAAC AGCTCCTCGAGTGTTGGAGAAGATGCAAGTATCCGATACGACTCAAAGCCACCACTTCAT TCTCAAAGGTTACCATCACCAGTCCCAGGAACGCTAAGGAAATACGTTGGCATGTTATCT CATCAGAATATTTATTTACCTGTCACATCCTTGCAAGAAACATCTGCTACCCAGATAGAA GGCGAGGTTGAATCTGGTAAAGAAATTGTCAGTAATGGTTTTCATGTTGGGTCAAAGGTG GAAGAGCCTGCAGTTTCTACTGCAAATGTGGATTGCTCACAAGATCACCAGAGACAAGAA AGAATTCAAGATATAATGCCAACAAATTCTACGCACGACAAACGTGAAGAATCACCTGTT ATGGTAGAAGATGGGGAACAACATAGCACCATTGATATCATTAGCAAAGAGAAAACTACT AACGAAGATCAAGCGGATGATGCCCTTGATACTCACAGCATATTAATTTTGATGTCCAGT CAATGCATAACAAAGCAGGTTATTTGTGAGCAGAGCCATCTTTCTCGTATAAAATATTAT GGGAATTTCGATGTGTCCTTAGGGCGATATTTGCAAGACATTTTGCAGAATCCGGTTTTG CAGAATCAGAAACTGAGCTGCTCTTCATGTGGAGAGTTTCCAGAGTCTCATCTGTACTCT TACACTCATCGGAATGGGAATTTGACCGTTCGAGTCAAGCATTTGGCGCCTCAACATCAT TTGCCTGGTGAATCTGAAGGGAAAATATGGATGTGGACCAGATGCTTGAGATGTGAGAAT GAACATGGGATGTCCAAATCGACTCCAAGAGTGCTCATATCATCTGAAGCACGAAGTCTC TCTTTTGGAAAATTCCTAGAACTCAGTTTTTCAAGCCATTCTGCGGCAAGAAGGCTTTCA ATATGCGGACATTTGGTGAACAGGGACTGCTTGCGCTTTTTTGGGTTGGGCTCGAAAGTT GCAATGTTCCGGTACTCATCAGTTGAAATTTATACAACCTGCAAACCACAAACCACTCTC CAGTTTGATAATCCCTGCAGGCAGGATTGGTTTAAAGAAGAGAGGAGATATGTTCTTGCT AGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAACCCTTAAAGGATCAGCTT CTTGATGTGACAACAACCAATTGCACCGGCTCTCTCCCTGTTAAAGACTTCTCTGAACTT GAAGAGTTGTTGATCAAAGAAAAGGCCTTTTTTGAGGATTCTCTAGAAAAGACAATTAAT CAGAATGAGAATCTATCTGCATCTGTGCATGAACTTGTTGATATCAATTGGTCCTACCAG GATCTTCTACTTGAACTTTATTTGTGGGACCGTCGACTGGATCAACTTACTAAGTGTGTT TCAGCTGGACAAGAGCGTGTTGTTAGTTGCAAAGATCCTTTTGATACTGTTGTCAAGAAT ATTAGGGTAAATCAGGAGATTGAAAATAAAGCTGACGAATTGACATGTGATAGAACTACA TCAGTTTTGAGCGCAGTTGGTTTGACTGAGTGTCCAAGTAATAGAAATTACATTGACCAC CAATCAGTTGACATTGAAGCACCCGTGCTTACTGAAAATCAGGGGGCTGGGTGTGCTCAA TTTTCTTCCACTGGAGGTAGAAATGATGAAGACTCTTACACTGCTCCTTGTCAACTAGAG GTAGATAGCATGGCACAAACCAAAGAAGTTCCTTCATTTGAAATTTCAGAGGTTCAGGGT GATGGGATAGTTGTTCATCCAATTTCTTTGGACCAGGAGCCTTCAAACGCTCCCAATCAT TTCAGAAAAATTCCAGACTGGGATACAGGGGAAGGGTGGATTTGGAATTCTTTCCATGAA TGTCAATTGGCTTACAGAAAGGACATACAAAATGAAATTTTGGATAAATTTGAAATTGTC AACCGTTATTCTCCGTCTCATATGTCTCCCTTGTTTGAGCAACATGAAGAAGTGAGCTCT CCACAGTTCACTGTTGGTCCAGGTGGTAATATTTTATCTGTACTGGAGGATGAGATATCT AGTATAATAGCCCGTGCTCTTGCTGTATCTGGGGAACACCGCCATTTAGTGGAGAATGAA ACAGAGGGTGCCAGGTTGGAGCATGCTAAAACAATGGAAAAATCATATAGCTTTATGTCT GGAAGTTCTCTTGACTCATCACCATGGTCATCTATCGGATCTTTAGATTCCGAAGCAAGT TTTTTGTCTCTTGGTTCATCAGTTTCATCAGATGACCTATCTGGTTATGATAGCTTGCCT TTGTTCTCTTCAATACATCCAGAAGTCGCTGTAAATGGAAAAGTAGCTCTCAGAGGCAAA TATTCTGTTACTAGCATATATGCTAAACAATTCCAAGATCTTCGAAAGAAGTGCTGCCCA TCTGAGCTTGCATATATTACTTCCCTAAGTCGCTGCAAGAAGTGGGATGCTCAGGGTGGA AAAAGTAAAGCTTTCTTTGCAAAGACAGTGGATGACAGGTTCATCATAAAGCAAATAAAG AAGACAGAGTTTGAGTCCTTCATAAAATTTGCCCCTGATTACTTCAAGCATGTTTACCAT TCTCTAGACACTGGAAGCCAAACTTGCCTTGCCAAAATATTGGGAATTTATCAGGTTAAG CAAACAAGGCATGGAAAAGAGATAAAGATCGATCTGTTGGTGATGGAAAACCTTCTCTTC GGGCACAATATTTCACGGATTTATGATCTTAAAGGTGCTATCTTTTCACGACACGTTGCA CACTCCAATGACCGTAATACTGTTTACTTGGATCAAAACTACGTCGAGGACATGCGTGTT TCTCCGATTTATATTGGTGGAAGAACAAAGCATCTTTTGCAACGTGCAATCTGGAACGAC ACATCATTCCTCACTTCGGTCAACGTTATGGACTATTCTCTGCTTGTGGGAGTGGACAAA GAAAAGCATGAGCTTGTATTTGGCATCATTGATTATCTGAGGCAGTACACTTGGGACAAG CAGCTGGAAACATGGGTGAAAAGTTCCCTAGTAGTGCCAAAGAATGTTTCACCAACTGTA GTTTCACCCAAGGAGTACAAGAAAAGGTTCCGGAAGTTCATGGCGAAGCACTTCCTCACA GTTCCAGATACATGGAGTTCAGAGAATTCTTCCGGACCAAGCAAATCGTTTGGGCATAGC AATAACATGTTGGTAGAAGTCCATAGTGATGACAATCTGCTTCAGCATCCAATTGAGGCT GAGACAGTTGTATAA

Peptide Sequence

PEP ID	Os08t0104700-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:254510:258757:1 gene:Os08g0104700 transcript:Os08t0104700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperonin Cpn60/TCP-1 family protein. (Os08t0104700-01);Hypothetical conserved gene. (Os08t0104700-02)
Sequence	DVKKSLSSSTKVDAPSSITNSSSSVGEDASIRYDSKPPLHSQRLPSPVPGTLRKYVGMLS HQNIYLPVTSLQETSATQIEGEVESGKEIVSNGFHVGSKVEEPAVSTANVDCSQDHQRQE RIQDIMPTNSTHDKREESPVMVEDGEQHSTIDIISKEKTTNEDQADDALDTHSILILMSS QCITKQVICEQSHLSRIKYYGNFDVSLGRYLQDILQNPVLQNQKLSCSSCGEFPESHLYS YTHRNGNLTVRVKHLAPQHHLPGESEGKIWMWTRCLRCENEHGMSKSTPRVLISSEARSL SFGKFLELSFSSHSAARRLSICGHLVNRDCLRFFGLGSKVAMFRYSSVEIYTTCKPQTTL QFDNPCRQDWFKEERRYVLARGIKLFSEVASMLQPLKDQLLDVTTTNCTGSLPVKDFSEL EELLIKEKAFFEDSLEKTINQNENLSASVHELVDINWSYQDLLLELYLWDRRLDQLTKCV SAGQERVVSCKDPFDTVVKNIRVNQEIENKADELTCDRTTSVLSAVGLTECPSNRNYIDH QSVDIEAPVLTENQGAGCAQFSSTGGRNDEDSYTAPCQLEVDSMAQTKEVPSFEISEVQG DGIVVHPISLDQEPSNAPNHFRKIPDWDTGEGWIWNSFHECQLAYRKDIQNEILDKFEIV NRYSPSHMSPLFEQHEEVSSPQFTVGPGGNILSVLEDEISSIIARALAVSGEHRHLVENE TEGARLEHAKTMEKSYSFMSGSSLDSSPWSSIGSLDSEASFLSLGSSVSSDDLSGYDSLP LFSSIHPEVAVNGKVALRGKYSVTSIYAKQFQDLRKKCCPSELAYITSLSRCKKWDAQGG KSKAFFAKTVDDRFIIKQIKKTEFESFIKFAPDYFKHVYHSLDTGSQTCLAKILGIYQVK QTRHGKEIKIDLLVMENLLFGHNISRIYDLKGAIFSRHVAHSNDRNTVYLDQNYVEDMRV SPIYIGGRTKHLLQRAIWNDTSFLTSVNVMDYSLLVGVDKEKHELVFGIIDYLRQYTWDK QLETWVKSSLVVPKNVSPTVVSPKEYKKRFRKFMAKHFLTVPDTWSSENSSGPSKSFGHS NNMLVEVHSDDNLLQHPIEAETVV

Transcript Sequence

Transcript ID	Os08t0104700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:254510:258757:1 gene:Os08g0104700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperonin Cpn60/TCP-1 family protein. (Os08t0104700-01);Hypothetical conserved gene. (Os08t0104700-02)
Sequence	TGATGTGAAGAAATCCCTCAGTTCATCAACAAAAGTAGATGCTCCAAGTTCAATAACAAA CAGCTCCTCGAGTGTTGGAGAAGATGCAAGTATCCGATACGACTCAAAGCCACCACTTCA TTCTCAAAGGTTACCATCACCAGTCCCAGGAACGCTAAGGAAATACGTTGGCATGTTATC TCATCAGAATATTTATTTACCTGTCACATCCTTGCAAGAAACATCTGCTACCCAGATAGA AGGCGAGGTTGAATCTGGTAAAGAAATTGTCAGTAATGGTTTTCATGTTGGGTCAAAGGT GGAAGAGCCTGCAGTTTCTACTGCAAATGTGGATTGCTCACAAGATCACCAGAGACAAGA AAGAATTCAAGATATAATGCCAACAAATTCTACGCACGACAAACGTGAAGAATCACCTGT TATGGTAGAAGATGGGGAACAACATAGCACCATTGATATCATTAGCAAAGAGAAAACTAC TAACGAAGATCAAGCGGATGATGCCCTTGATACTCACAGCATATTAATTTTGATGTCCAG TCAATGCATAACAAAGCAGGTTATTTGTGAGCAGAGCCATCTTTCTCGTATAAAATATTA TGGGAATTTCGATGTGTCCTTAGGGCGATATTTGCAAGACATTTTGCAGAATCCGGTTTT GCAGAATCAGAAACTGAGCTGCTCTTCATGTGGAGAGTTTCCAGAGTCTCATCTGTACTC TTACACTCATCGGAATGGGAATTTGACCGTTCGAGTCAAGCATTTGGCGCCTCAACATCA TTTGCCTGGTGAATCTGAAGGGAAAATATGGATGTGGACCAGATGCTTGAGATGTGAGAA TGAACATGGGATGTCCAAATCGACTCCAAGAGTGCTCATATCATCTGAAGCACGAAGTCT CTCTTTTGGAAAATTCCTAGAACTCAGTTTTTCAAGCCATTCTGCGGCAAGAAGGCTTTC AATATGCGGACATTTGGTGAACAGGGACTGCTTGCGCTTTTTTGGGTTGGGCTCGAAAGT TGCAATGTTCCGGTACTCATCAGTTGAAATTTATACAACCTGCAAACCACAAACCACTCT CCAGTTTGATAATCCCTGCAGGCAGGATTGGTTTAAAGAAGAGAGGAGATATGTTCTTGC TAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAACCCTTAAAGGATCAGCT TCTTGATGTGACAACAACCAATTGCACCGGCTCTCTCCCTGTTAAAGACTTCTCTGAACT TGAAGAGTTGTTGATCAAAGAAAAGGCCTTTTTTGAGGATTCTCTAGAAAAGACAATTAA TCAGAATGAGAATCTATCTGCATCTGTGCATGAACTTGTTGATATCAATTGGTCCTACCA GGATCTTCTACTTGAACTTTATTTGTGGGACCGTCGACTGGATCAACTTACTAAGTGTGT TTCAGCTGGACAAGAGCGTGTTGTTAGTTGCAAAGATCCTTTTGATACTGTTGTCAAGAA TATTAGGGTAAATCAGGAGATTGAAAATAAAGCTGACGAATTGACATGTGATAGAACTAC ATCAGTTTTGAGCGCAGTTGGTTTGACTGAGTGTCCAAGTAATAGAAATTACATTGACCA CCAATCAGTTGACATTGAAGCACCCGTGCTTACTGAAAATCAGGGGGCTGGGTGTGCTCA ATTTTCTTCCACTGGAGGTAGAAATGATGAAGACTCTTACACTGCTCCTTGTCAACTAGA GGTAGATAGCATGGCACAAACCAAAGAAGTTCCTTCATTTGAAATTTCAGAGGTTCAGGG TGATGGGATAGTTGTTCATCCAATTTCTTTGGACCAGGAGCCTTCAAACGCTCCCAATCA TTTCAGAAAAATTCCAGACTGGGATACAGGGGAAGGGTGGATTTGGAATTCTTTCCATGA ATGTCAATTGGCTTACAGAAAGGACATACAAAATGAAATTTTGGATAAATTTGAAATTGT CAACCGTTATTCTCCGTCTCATATGTCTCCCTTGTTTGAGCAACATGAAGAAGTGAGCTC TCCACAGTTCACTGTTGGTCCAGGTGGTAATATTTTATCTGTACTGGAGGATGAGATATC TAGTATAATAGCCCGTGCTCTTGCTGTATCTGGGGAACACCGCCATTTAGTGGAGAATGA AACAGAGGGTGCCAGGTTGGAGCATGCTAAAACAATGGAAAAATCATATAGCTTTATGTC TGGAAGTTCTCTTGACTCATCACCATGGTCATCTATCGGATCTTTAGATTCCGAAGCAAG TTTTTTGTCTCTTGGTTCATCAGTTTCATCAGATGACCTATCTGGTTATGATAGCTTGCC TTTGTTCTCTTCAATACATCCAGAAGTCGCTGTAAATGGAAAAGTAGCTCTCAGAGGCAA ATATTCTGTTACTAGCATATATGCTAAACAATTCCAAGATCTTCGAAAGAAGTGCTGCCC ATCTGAGCTTGCATATATTACTTCCCTAAGTCGCTGCAAGAAGTGGGATGCTCAGGGTGG AAAAAGTAAAGCTTTCTTTGCAAAGACAGTGGATGACAGGTTCATCATAAAGCAAATAAA GAAGACAGAGTTTGAGTCCTTCATAAAATTTGCCCCTGATTACTTCAAGCATGTTTACCA TTCTCTAGACACTGGAAGCCAAACTTGCCTTGCCAAAATATTGGGAATTTATCAGGTTAA GCAAACAAGGCATGGAAAAGAGATAAAGATCGATCTGTTGGTGATGGAAAACCTTCTCTT CGGGCACAATATTTCACGGATTTATGATCTTAAAGGTGCTATCTTTTCACGACACGTTGC ACACTCCAATGACCGTAATACTGTTTACTTGGATCAAAACTACGTCGAGGACATGCGTGT TTCTCCGATTTATATTGGTGGAAGAACAAAGCATCTTTTGCAACGTGCAATCTGGAACGA CACATCATTCCTCACTTCGGTCAACGTTATGGACTATTCTCTGCTTGTGGGAGTGGACAA AGAAAAGCATGAGCTTGTATTTGGCATCATTGATTATCTGAGGCAGTACACTTGGGACAA GCAGCTGGAAACATGGGTGAAAAGTTCCCTAGTAGTGCCAAAGAATGTTTCACCAACTGT AGTTTCACCCAAGGAGTACAAGAAAAGGTTCCGGAAGTTCATGGCGAAGCACTTCCTCAC AGTTCCAGATACATGGAGTTCAGAGAATTCTTCCGGACCAAGCAAATCGTTTGGGCATAG CAATAACATGTTGGTAGAAGTCCATAGTGATGACAATCTGCTTCAGCATCCAATTGAGGC TGAGACAGTTGTATAAATGACTTCTCTGACAGTTGTTGAATCCTATCCTGTTGCTACTTG GCTTTTTTTTTTTCATTTTGTAAAATGGTGTACATAGGAGGGCCTCACTCACTAATTGAT TTTGGCAACCCCAGAGAAGTTTGCAGATTTTAGGCAAGTCGATGGGGGGCAAGTGAGGCC TACAGTACATGTATGTATACAAATGTTCATTGTTAATTTCACAGTTATTACAGTGAAATT GCAAAATTGATGATTATTCTGAACC