Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0103400-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:190890:194555:-1 gene:Os08g0103400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to palmitoyltransferase ZDHHC9. (Os08t0103400-00)
Sequence

ATGGCCATGGCCAAGCAGCAGCGGGTTTACCAAGTCTGGAAAGGCAACAACATAATCTTG
TGCGGTGGAAGGTTTATCTTTGGACCAGATGCCAAGGCCACTCTGCTATCTTTCTCTCTA
ATTGCAATCCCGGTTGCCGTCTTCTGCTACTTTGTGGCGAGGCATCTCATACACATGTTT
CCTGCATATAATGCAGGGTATGCAATTCTTGCTGTTACCATAGTCCTCTCAATTTATGTA
CTGTTACTGCTCTTCTTGACCTCATCTCAAGATCCAGGTATTGTACCACGGAACTCACAT
CCACCTGTGGAAGAGTTTTCTCATGATGCTTCAGCTCCACACACTCTTCAGTTTCCACGG
GTCAAGGAGATTTTGGTCAATGGTGTACCCGTGAAAGTAAAATACTGTGACACTTGCATG
ATATATCGACCTCCGCGCTGCTCTCACTGTTCCAAATGTGATAACTGTGTCGAGCGCTTT
GATCACCACTGTCCTTGGGTTGGGCAGTGCATTGGACAGCGCAATTATCGCTACTTCTTC
TGTTTTGTATCTTCAGCAGCCATCCTGTGCATCTACATATTTTCAATGTGCGCTTTGCAC
ATCAAGCTTCTCATGAATAGGGATCATCATTCAGTGATAAAGGCAATTAAAGAATCTCCA
GCATCAGTGGCAATTATGGCATATTGTTTCATCTGTTTCTGGTTCGTTGGTGGTCTCACA
GGGTTCCATTCTTACCTCATTGCAACAAATAAGACAACATATGAGAACCTCAAGTACAAA
TACAACAACCAACCCAACGTGTTTGACCGTGGTTGCATGAACAACTGTTCTGAATTCTTC
TGCACCAAAAGAGCGCCTTCAAGGATCAACCTGAGAGCAATTGTTCAAGAGGACCATGGG
GTAGCACCACCACGAATCAGCCGTTCCAATGTAGCAGAAGAGGAGACACCCCACCGTCCA
CGAGCCAAAGTCGAGGATGATCTTGAGATGGGCCTCGACATCCTTAAGACCTCACAACGT
CGGTCAGATGAACTGGGTGACGAAGAGTTGGGAGTTGAAAGCAATGGCGTGAAATATCGC
AGAGCTGACTGCTCACCTGGTTTAGACAATGAGATCCCAATTACAAGAACTAAGATTGAG
AGTTCTAGTGAGGTTAGAGATCTGGAGATCTTGCCAACTGGCAATGCTGCACTCCCTTCA
TCTCCTGAGAAGAAACAACATCCTGATGTACTTTGTTGA

Peptide Sequence

PEP ID

Os08t0103400-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:190890:194555:-1 gene:Os08g0103400 transcript:Os08t0103400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to palmitoyltransferase ZDHHC9. (Os08t0103400-00)
Sequence

MAMAKQQRVYQVWKGNNIILCGGRFIFGPDAKATLLSFSLIAIPVAVFCYFVARHLIHMF
PAYNAGYAILAVTIVLSIYVLLLLFLTSSQDPGIVPRNSHPPVEEFSHDASAPHTLQFPR
VKEILVNGVPVKVKYCDTCMIYRPPRCSHCSKCDNCVERFDHHCPWVGQCIGQRNYRYFF
CFVSSAAILCIYIFSMCALHIKLLMNRDHHSVIKAIKESPASVAIMAYCFICFWFVGGLT
GFHSYLIATNKTTYENLKYKYNNQPNVFDRGCMNNCSEFFCTKRAPSRINLRAIVQEDHG
VAPPRISRSNVAEEETPHRPRAKVEDDLEMGLDILKTSQRRSDELGDEELGVESNGVKYR
RADCSPGLDNEIPITRTKIESSSEVRDLEILPTGNAALPSSPEKKQHPDVLC

Transcript Sequence

Transcript ID

Os08t0103400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:190890:194555:-1 gene:Os08g0103400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to palmitoyltransferase ZDHHC9. (Os08t0103400-00)
Sequence

GTGGAGTGGCTTTCTCCTCTTCTTCTTCTTCCTTCGTGCGGCCTGCGGCCATGGCCATGG
CCAAGCAGCAGCGGGTTTACCAAGTCTGGAAAGGCAACAACATAATCTTGTGCGGTGGAA
GGTTTATCTTTGGACCAGATGCCAAGGCCACTCTGCTATCTTTCTCTCTAATTGCAATCC
CGGTTGCCGTCTTCTGCTACTTTGTGGCGAGGCATCTCATACACATGTTTCCTGCATATA
ATGCAGGGTATGCAATTCTTGCTGTTACCATAGTCCTCTCAATTTATGTACTGTTACTGC
TCTTCTTGACCTCATCTCAAGATCCAGGTATTGTACCACGGAACTCACATCCACCTGTGG
AAGAGTTTTCTCATGATGCTTCAGCTCCACACACTCTTCAGTTTCCACGGGTCAAGGAGA
TTTTGGTCAATGGTGTACCCGTGAAAGTAAAATACTGTGACACTTGCATGATATATCGAC
CTCCGCGCTGCTCTCACTGTTCCAAATGTGATAACTGTGTCGAGCGCTTTGATCACCACT
GTCCTTGGGTTGGGCAGTGCATTGGACAGCGCAATTATCGCTACTTCTTCTGTTTTGTAT
CTTCAGCAGCCATCCTGTGCATCTACATATTTTCAATGTGCGCTTTGCACATCAAGCTTC
TCATGAATAGGGATCATCATTCAGTGATAAAGGCAATTAAAGAATCTCCAGCATCAGTGG
CAATTATGGCATATTGTTTCATCTGTTTCTGGTTCGTTGGTGGTCTCACAGGGTTCCATT
CTTACCTCATTGCAACAAATAAGACAACATATGAGAACCTCAAGTACAAATACAACAACC
AACCCAACGTGTTTGACCGTGGTTGCATGAACAACTGTTCTGAATTCTTCTGCACCAAAA
GAGCGCCTTCAAGGATCAACCTGAGAGCAATTGTTCAAGAGGACCATGGGGTAGCACCAC
CACGAATCAGCCGTTCCAATGTAGCAGAAGAGGAGACACCCCACCGTCCACGAGCCAAAG
TCGAGGATGATCTTGAGATGGGCCTCGACATCCTTAAGACCTCACAACGTCGGTCAGATG
AACTGGGTGACGAAGAGTTGGGAGTTGAAAGCAATGGCGTGAAATATCGCAGAGCTGACT
GCTCACCTGGTTTAGACAATGAGATCCCAATTACAAGAACTAAGATTGAGAGTTCTAGTG
AGGTTAGAGATCTGGAGATCTTGCCAACTGGCAATGCTGCACTCCCTTCATCTCCTGAGA
AGAAACAACATCCTGATGTACTTTGTTGACAAATACATGAATGTGGCTGTGAAAAGTGAA
GTTGTTTTCATGGATTGCTGACAACCAACAACTTGTTATTCATCAGGTGTACAAATGGAA
TCCGGATGTCATTTGACGTATGTTGAGTGTTGCCATCTCTTCCTGGGATTTTGAGTGGGC
TGTTGATTAGTCAGTCATATCATAGGGTTCTTCCTGTAACGATCTCCCGTTAAGCAGTTT
ATGAAGGTTTCTTTTTTTTTTCATCTAGGATTTGTTTCCAAGATTGCAGGAATGGTGCTT
CATTACTGTTAAGTGTTAATTGTACATAATCTGCATGCCTATGAATCGATCAACTGATAT
TGCCTCCTTTCCAAGTGGCTCCTTC